Extended Data Fig. 2: SIRV only assembly accuracy.
From: StringTie3 improves total RNA-seq assembly by resolving nascent and mature transcripts
Scatter plots show SIRV-only precision (x-axis) versus matching transcripts (TPs) or the number of correctly assembled SIRV transcripts (y-axis) in annotation free (left column) and annotation guided (right column) modes. Each point represents one replicate. In the guided panels, CHESS was provided to each method but SIRV models were withheld to test generalization to novel transcript discovery beyond the guidance set; metrics in all four panels are computed only on SIRVs.
