Table 1 Data collection and refinement statistics

From: De novo design of obligate ABC-type heterotrimeric proteins

 

DHT03_2arm_A21/B21/C long

DHT03

DHT03_1arm_A21/B/C

Data collection

Space group

P1

P1

P1

Cell dimensions

 a, b, c (Å)

59.47, 68.05, 98.99

37.25, 39.92, 50.42

55.73, 73.5, 97.28

 α, β, γ (°)

106.461, 108.516, 93.086

88.974, 105.789, 115.319

73.422, 82.919, 80.781

Resolution (Ã…)

45.87–3.35 (3.47–3.35)a

48.21–2.10 (2.175–2.1)a

49.01–3.35 (3.47–3.35)a

Total observations

35,399 (3,655)a

22,444 (919)a

37,099 (3,840)a

Unique reflections

18,621 (1,887)a

11,814 (500)a

19,545 (1,994)a

Redundancy

1.9 (1.9)a

1.9 (1.8)a

1.9 (1.9)a

Completeness (%)

76.72 (60.34)a

73.95 (24.42)a

84.33 (71.67)a

Rmeas

0.09258 (1.532)a

0.0573 (1.003)a

0.1078 (1.082)a

I/σ(I)

6.5 (0.78)a

8.68 (0.95)a

6.88 (1.01)a

CC1/2

0.998 (0.554)a

0.994 (0.646)a

0.998 (0.431)a

Refinement

Resolution (Ã…)

45.87–3.35

48.21–2.10

49.01–3.35

Reflections (work)

18,614

11,814

19,543

Reflections (test)

751

1,094

1,772

Rwork/Rfree (%)

29.47/32.69

22.61/27.26

24.91/30.51

Average B-factor (Ã…2)

133.68

75.62

98.69

Number of atoms

Protein

5,365

1,913

11,098

Water

0

5

0

Ramachandranb

Favored (%)

100

98.65

98.91

Outliers (%)

0

0

0.15

Rotamersb

Favored (%)

96.67

97.31

96.47

Outliers (%)

0.53

0

0.25

RMSDs

Bond lengths (Ã…)

0.002

0.002

0.002

Bond angles (°)

0.88

0.38

0.37

Molprobityb

Molprobity score

1.32

1.19

1.31

Percentile

100th

100th

100th

Clashscore

5.91

4

5.68

Percentile

100th

99th

100th

PDB ID

7UPP

7UPO

7UPQ

  1. aNumbers in parentheses refer to the highest-resolution shell.
  2. bAs reported by MolProbity37.