Extended Data Fig. 9: Phylogenetic tree of retrovirus CA.
From: Distinct stabilization of the human T cell leukemia virus type 1 immature Gag lattice
Phylogenetic tree derived from 16 different retrovirus CA sequences, from 5 different retrovirus genera. Multiple sequence alignment (MSA) was performed using Clustal Omega (https://www.ebi.ac.uk/jdispatcher/msa/clustalo) and the phylogenetic tree was generated using the webserver implementation of iTOL (https://itol.embl.de/). The UniProt accession IDs and the CA residues are indicated in the FASTA header on the right side. The boxed numbers indicate the branch length. EIAVY – Equine infectious anemia virus, FIVPE – Feline immunodeficiency virus, HV2 – HIV2, HV1 – HIV1, ALVA – Avian leukosis virus, RSVP – Rous sarcoma Virus, MMTV – Mouse mammary tumor virus, JSRV - Jaagsiekte sheep retrovirus, MPMV – Mason-Pfizer monkey virus, KORV – Koalaretrovirus, FLV – Feline leukemia virus, MLVMS – Murine leukemia virus, BLVAU – Bovine leukemia virus, HTL1A – HTLV1, HTLV2, HTL32 – HTLV3.
