Table 1 Cryo-EM data collection, refinement and validation statistics
From: Structural landscape of activation, desensitization and inhibition in the human TRPM4 channel
| Â | Ca2+-PtdIns(4,5)P2 open | Ca2+ putative desensitized | Apo closed | ATP-inhibited |
|---|---|---|---|---|
Data collection and processing | Â | Â | Â | Â |
Magnification | 165,000 | 165,000 | 165,000 | 105,000 |
Voltage (kV) | 300 | 300 | 300 | 300 |
Electron exposure (e− per Å2) | 60 | 60 | 60 | 60 |
Defocus range (μm) | −0.9 to −2.2 | −0.9 to −2.2 | −0.9 to −2.2 | −0.9 to −2.2 |
Pixel size (Ã…) | 0.738 | 0.738 | 0.738 | 0.775 |
Symmetry imposed | C4 | C4 | C4 | C4 |
Initial particle images (no.) | 1,491,638 | 1,491,638 | 1,491,638 | 4,103,287 |
Final particle images (no.) | 32,765 | 57,360 | 78,427 | 153,652 |
Map resolution (Ã…) | 2.44 | 3.19 | 2.78 | 2.63 |
 FSC threshold: 0.143 |  |  |  |  |
Refinement | Â | Â | Â | Â |
Model resolution (Å)  FSC threshold: 0.143 | 2.44 | 3.18 | 2.78 | 2.64 |
Map sharpening B factor (Å2) | −54.8 | −89.6 | −82.0 | −86.3 |
Model composition | Â | Â | Â | Â |
 Nonhydrogen atoms | 30,544 | 27,192 | 31,232 | 30,964 |
 Protein residues | 3,804 | 3,420 | 3,924 | 3,876 |
 Ligands | Ca2+: 8, PtdIns(4,5)P2: 4 | Ca2+: 4 | - | ATP: 4 |
B factors (Ã…2) | Â | Â | Â | Â |
 Protein | 85.41 | 95.81 | 92.17 | 53.54 |
 Ligand | 57.74 | 43.90 | - | 64.80 |
Root-mean-square deviations | Â | Â | Â | Â |
 Bond lengths (Å) | 0.003 | 0.003 | 0.002 | 0.003 |
 Bond angles (°) | 0.510 | 0.450 | 0.435 | 0.497 |
Validation | Â | Â | Â | Â |
 MolProbity score | 1.01 | 1.30 | 1.03 | 1.47 |
 Clashscore | 2.33 | 4.09 | 2.45 | 3.86 |
 Poor rotamers (%) | 0.87 | 1.39 | 0.48 | 1.83 |
Ramachandran plot | Â | Â | Â | Â |
 Favored (%) | 98.92 | 98.59 | 98.47 | 97.56 |
 Allowed (%) | 1.08 | 1.41 | 1.53 | 2.44 |
 Disallowed (%) | 0 | 0 | 0 | 0 |