Table 2 Assembly descriptors records.
From: Geometric description of self-interaction potential in symmetric protein complexes
Field | Description | Type |
|---|---|---|
pdb_long | Four characters PDB accession code, followed by the assembly number | string |
pdb_short | Four characters PDB accession code | string |
uniprot | Uniprot accession code | string |
resol | X-ray crystallography resolution (Ã…) | float |
sym | Symmetry of protein assembly | string |
nsub | Number of subunits in protein assembly | int |
mw | Molecular weight of protein assembly (Da) | float |
PiQSi | Quaternary structure validity inferred in the manually curated database PiQSi (YES/NO & PROBYES/PROBNOT). YES/PROBYES indicates likely errors. | string |
QSalign | Quaternary structure validity inferred from QSalign (YES/NO & PROBYES/PROBNOT). YES/PROBYES indicates likely errors. | string |
QSbio | Quaternary structure error probability from QSbio (range 0-100) | float |
tv_discard | Assembly ignored in the technical validation (binary) | int |
h_80 | Assembly belonging to a non-redundant dataset where no two structures share the same QS and sequence identity >80% (binary) | int |
h_90 | Assembly belonging to a non-redundant dataset where no two structures share the same QS and sequence identity >90% (binary) | int |