Online-only Table 1 URLs to BioBB’s distribution sites.

biobb (general)

Documentation

https://biobb.readthedocs.io

Source code

https://github.com/bioexcel/biobb

biobb_io

Documentation

https://readthedocs.org/projects/biobb-io/

Source code

https://github.com/bioexcel/biobb_io

Package (PyPi)

https://pypi.org/project/biobb-io/

Package (Bioconda)

https://anaconda.org/bioconda/biobb_io

Container (Docker)

https://quay.io/repository/biocontainers/biobb_io

Container (Singularity)

https://cloud.sylabs.io/library/andriopau/default/biobb

biobb_model

Documentation

https://biobb-model.readthedocs.io

Source code

https://github.com/bioexcel/biobb_model

Package (PyPi)

https://pypi.org/project/biobb-model/

Package (Bioconda)

https://anaconda.org/bioconda/biobb_model

Container (Docker)

https://quay.io/repository/biocontainers/biobb_model

Container (Singularity)

https://cloud.sylabs.io/library/andriopau/default/biobb

biobb_md

Documentation

https://biobb-md.readthedocs.io

Source code

https://github.com/bioexcel/biobb_md

Package (PyPi)

https://pypi.org/project/biobb-md/

Package (Bioconda)

https://anaconda.org/bioconda/biobb_md

Container (Docker)

https://quay.io/repository/biocontainers/biobb_md

Container (Singularity)

https://cloud.sylabs.io/library/andriopau/default/biobb

biobb_analysis

Documentation

https://biobb-analysis.readthedocs.io

Source code

https://github.com/bioexcel/biobb_analysis

Package (PyPi)

https://pypi.org/project/biobb-analysis/

Package (Bioconda)

https://anaconda.org/bioconda/biobb_analysis

Container (Docker)

https://cloud.docker.com/u/mmbirb/repository/docker/mmbirb/biobb_analysis

Container (Singularity)

https://cloud.sylabs.io/library/andriopau/default/biobb

biobb_common

Documentation

https://biobb-common.readthedocs.io

Source code

https://github.com/bioexcel/biobb_common

Package (PyPi)

https://pypi.org/project/biobb-common/

Package (Bioconda)

https://anaconda.org/bioconda/biobb_common

Container (Docker)

https://quay.io/repository/biocontainers/biobb_common

biobb_template

Documentation

https://biobb-template.readthedocs.io

Source code

https://github.com/bioexcel/biobb_template

biobb_adapters

Source code

https://github.com/bioexcel/biobb_adapters

biobb_wf_mutations

Source code

https://github.com/bioexcel/biobb_wf_mutations

Package (PyPi)

https://pypi.org/project/biobb-wf-mutations/

Jupyter Notebook

https://mybinder.org/v2/gh/bioexcel/biobb_workflows/master

Galaxy

https://dev.usegalaxy.es/workflows/list_published

Virtual Machine

http://mmb.irbbarcelona.org/BioExcel/biobb.ova