Table 1 Primer sequences.

From: ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer

Gene

Primer name

Primer sequence (5′-3′)

KRAS

KRASf

TTATAAGGCCTGCTGAAAATGACTGAA

5′KRASf clamp

CGCCCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCCC

KRASr

TGAATTAGCTGTATCGTCAAGGCACT

BRAF

BRAF-51F TaqMan

CTACTGTTTTCCTTTACTTACTACACCTCAGA

BRAF-176R TaqMan

ATCCAGACAACTGTTCAAACTGATG

BRAFWT probe

FAM-TAGCTACAGaGAAATC

BRAFmut probe

VIC-CTAGCTACAGtGAAATC

BRAFFs

TGCTTGCTCTGATAGGAAAATG

BRAFRs

CCACAAAATGGATCCAGACA

BRAFseq

TGATAGGAAAATGAGATCTAC

PIK3CA

PI542-5EF

TGCTTTTTCTGTAAATCATCTGTGA

PI542-5ER

TGCTGAGATCAGCCAAATTC

PI1047EF

CATTTGCTCCAAACTGACCA

PI1047ER

GGTCTTTGCCTGCTGAGAGT

PI542-5IF

GCTAGAGACAATGAATTAAGGGAAA

PI542-5IR

AAGAAAAAGAAACAGAGAATCTCCA

PI1047IF

TATTCGACAGCATGCCAATC

PI1047IR

TGTGTGGAAGATCCAATCCA

PI1047seq

TTTTGATGACATTGCATACA