Online-only Table 5 Predicted RNA-editing sites in Scaffold 2 of the C. sinensis var. assamica mt genome.
From: Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica
No. | Gene | Nucleotide Position | AA Pos | Effect | Score* |
|---|---|---|---|---|---|
1 | rps19 | 116 | 39 | TCG (S) => TTG (L) | 1 |
2 | rps19 | 163 | 55 | CCT (P) => TTT (F) | 1 |
3 | rps19 | 164 | 55 | CCT (P) => TTT (F) | 1 |
4 | atp9 | 53 | 18 | TCA (S) => TTA (L) | 1 |
5 | atp9 | 83 | 28 | TCA (S) => TTA (L) | 1 |
6 | cob | 118 | 40 | CCG (P) => TCG (S) | 0.92 |
7 | cob | 178 | 60 | CAC (H) => TAC (Y) | 1 |
8 | cob | 286 | 96 | CTC (L) => TTC (F) | 1 |
9 | cob | 298 | 100 | CAC (H) => TAC (Y) | 1 |
10 | cob | 325 | 109 | CAT (H) => TAT (Y) | 1 |
11 | cob | 358 | 120 | CGG (R) => TGG (W) | 1 |
12 | cob | 419 | 140 | CCA (P) => CTA (L) | 1 |
13 | cob | 568 | 190 | CAT (H) => TAT (Y) | 0.92 |
14 | cob | 680 | 227 | TCT (S) => TTT (F) | 1 |
15 | cob | 808 | 270 | CCC (P) => TCC (S) | 1 |
16 | cob | 853 | 285 | CAT (H) => TAT (Y) | 1 |
17 | cob | 908 | 303 | CCA (P) => CTA (L) | 1 |
18 | cob | 914 | 305 | TCT (S) => TTT (F) | 1 |
19 | cob | 982 | 328 | CAC (H) => TAC (Y) | 0.85 |
20 | cob | 1015 | 339 | CGC (R) => TGC (C) | 1 |
21 | cob | 1084 | 362 | CCT (P) => TCT (S) | 1 |
22 | cob | 1124 | 375 | CCG (P) => CTG (L) | 1 |
23 | rps14 | 47 | 16 | GCG (A) => GTG (V) | 0.6 |
24 | rps14 | 271 | 91 | CCT (P) => TCT (S) | 0.6 |
25 | rpl5 | 35 | 12 | TCA (S) => TTA (L) | 0.78 |
26 | rpl5 | 47 | 16 | CCG (P) => CTG (L) | 1 |
27 | rpl5 | 59 | 20 | CCG (P) => CTG (L) | 0.89 |
28 | rpl5 | 64 | 22 | CAC (H) => TAC (Y) | 1 |
29 | rpl5 | 92 | 31 | TCG (S) => TTG (L) | 1 |
30 | rpl5 | 172 | 58 | CGC (R) => TGC (C) | 0.89 |
31 | rpl5 | 518 | 173 | CCA (P) => CTA (L) | 0.89 |
32 | rpl5 | 521 | 174 | CCG (P) => CTG (L) | 1 |
33 | nad2 | 110 | 37 | TCT (S) => TTT (F) | 1 |
34 | nad2 | 125 | 42 | TCC (S) => TTC (F) | 1 |
35 | nad2 | 272 | 91 | TCT (S) => TTT (F) | 0.67 |
36 | nad2 | 284 | 95 | TCA (S) => TTA (L) | 1 |
37 | nad2 | 293 | 98 | TCT (S) => TTT (F) | 1 |
38 | nad2 | 412 | 138 | CAT (H) => TAT (Y) | 1 |
39 | nad2 | 442 | 148 | CGT (R) => TGT (C) | 0.78 |
40 | nad2 | 446 | 149 | ACT (T) => ATT (I) | 1 |
41 | nad2 | 512 | 171 | TCA (S) => TTA (L) | 0.78 |
42 | nad2 | 542 | 181 | TCA (S) => TTA (L) | 1 |
43 | nad2 | 611 | 204 | TCG (S) => TTG (L) | 1 |
44 | nad2 | 731 | 244 | CCA (P) => CTA (L) | 0.67 |
45 | nad2 | 760 | 254 | CGT (R) => TGT (C) | 1 |
46 | nad2 | 932 | 311 | TCA (S) => TTA (L) | 0.67 |
47 | nad2 | 941 | 314 | CCA (P) => CTA (L) | 1 |
48 | nad2 | 989 | 330 | TCA (S) => TTA (L) | 1 |
49 | sdh3 | 67 | 23 | CCA (P) => TCA (S) | 1 |
50 | sdh3 | 74 | 25 | TCC (S) => TTC (F) | 1 |
51 | ccmFc | 38 | 13 | TCC (S) => TTC (F) | 0.83 |
52 | ccmFc | 50 | 17 | CCT (P) => CTT (L) | 1 |
53 | ccmFc | 52 | 18 | CGT (R) => TGT (C) | 1 |
54 | ccmFc | 103 | 35 | CCC (P) => TCC (S) | 1 |
55 | ccmFc | 119 | 40 | TCT (S) => TTT (F) | 1 |
56 | ccmFc | 122 | 41 | TCC (S) => TTC (F) | 1 |
57 | ccmFc | 146 | 49 | CCT (P) => CTT (L) | 1 |
58 | ccmFc | 151 | 51 | CCT (P) => TCT (S) | 0.83 |
59 | ccmFc | 155 | 52 | TCA (S) => TTA (L) | 1 |
60 | ccmFc | 160 | 54 | CCT (P) => TCT (S) | 0.67 |
61 | ccmFc | 203 | 68 | ACG (T) => ATG (M) | 1 |
62 | ccmFc | 305 | 102 | TCA (S) => TTA (L) | 0.83 |
63 | ccmFc | 391 | 131 | CGT (R) => TGT (C) | 1 |
64 | ccmFc | 406 | 136 | CGT (R) => TGT (C) | 0.83 |
65 | ccmFc | 620 | 207 | GCG (A) => GTG (V) | 1 |
66 | ccmFc | 704 | 235 | GCT (A) => GTT (V) | 0.83 |
67 | ccmFc | 1100 | 367 | CCA (P) => CTA (L) | 1 |
68 | ccmFc | 1121 | 374 | TCG (S) => TTG (L) | 1 |
69 | ccmFc | 1276 | 426 | CGA (R) => TGA (X) | 1 |
