Table 4 Repetitive element annotations in the yellowbelly pufferfish.
No. of TEs | Length (bp) | % of total TEs | % of genome | |
|---|---|---|---|---|
Total repeat fraction | 300,773 | 60,927,544 | 100 | 16.63 |
Class I: Retroelement | 77,720 | 29,919,159 | 49.11 | 8.17 |
LTR retrotransposon | 20,782 | 10,394,098 | 17.06 | 2.84 |
Ty1/Copia | 865 | 227,841 | 0.37 | 0.06 |
Ty3/Gypsy | 7,440 | 3,670,541 | 6.02 | 1.00 |
Other | 12,477 | 6,495,716 | 10.66 | 1.77 |
Non-LTR retrotransposon | 51,417 | 18,060,948 | 29.64 | 4.93 |
LINE | 37,274 | 16,042,878 | 26.33 | 4.38 |
SINE | 14,143 | 2,018,070 | 3.31 | 0.55 |
Unclassified retroelement | 5,521 | 1,464,113 | 2.40 | 0.40 |
Class II: DNA transposon | 39,742 | 11,514,017 | 18.90 | 3.14 |
TIR | ||||
CMC[DTC] | 3,477 | 365,955 | 0.60 | 0.10 |
hAT | 8,606 | 3,318,856 | 5.45 | 0.91 |
Mutator | 406 | 110,998 | 0.18 | 0.03 |
Tc1/Mariner | 9,293 | 3,015,854 | 4.95 | 0.82 |
PIF/Harbinger | 2,035 | 672,257 | 1.10 | 0.18 |
Other | 6,632 | 1,014,243 | 1.66 | 0.28 |
Helitron | 74 | 12,208 | 0.02 | 0.00 |
Tandem repeats | 194,185 | 19,801,588 | 32.50 | 5.41 |
Unknown | 1,412 | 870,602 | 1.43 | 0.24 |
