Table 2 Coverage statistics by exons.
From: Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel
Exon | Legacy exons | # of amplicons | chrom | start | end | amplicon size | exon size | %GC per exon | Mean coverage in run 1 | Mean coverage in run 2 |
|---|---|---|---|---|---|---|---|---|---|---|
5′UTR/exon 1 | 5′UTR/exon 1 | 3 | 7 | 117119962 | 117120276 | 315 | 185 | 49.06 | 6167 | 1614 |
intron 1 | intron 1 | 1 | 7 | 117138316 | 117138397 | 82 | n/a | n/a | 2336 | 1241 |
exon 2 | exon 2 | 1 | 7 | 117144280 | 117144470 | 191 | 111 | 41.44 | 1938 | 318 |
exon 3 | exon 3 | 2 | 7 | 117149053 | 117149317 | 265 | 109 | 35.78 | 2649 | 609 |
exon 4 | exon 4 | 3 | 7 | 117170885 | 117171193 | 309 | 216 | 43.06 | 10523 | 2370 |
exon 5 | exon 5 | 2 | 7 | 117174257 | 117174547 | 291 | 90 | 34.44 | 2802 | 677 |
exon 6 | exon 6a | 2 | 7 | 117175242 | 117175522 | 281 | 164 | 51.22 | 9552 | 2095 |
exon 7 | exon 6b | 2 | 7 | 117176547 | 117176786 | 240 | 126 | 36.51 | 3840 | 1087 |
exon 8 | exon 7 | 4 | 7 | 117180106 | 117180469 | 364 | 247 | 44.13 | 6255 | 1518 |
exon 9 | exon 8 | 2 | 7 | 117182001 | 117182229 | 229 | 93 | 36.56 | 1558 | 352 |
exon 10 | exon 9 | 2 | 7 | 117188640 | 117188881 | 242 | 183 | 38.8 | 2021 | 377 |
exon 11 | exon 10 | 2 | 7 | 117199456 | 117199739 | 284 | 192 | 38.54 | 3458 | 707 |
exon 12 | exon 11 | 1 | 7 | 117227747 | 117227914 | 168 | 95 | 42.11 | 8258 | 1781 |
intron 12 | intron 11 | 2 | 7 | 117229400 | 117229594 | 195 | n/a | n/a | 2062 | 730 |
exon 13 | exon 12 | 2 | 7 | 117230379 | 117230552 | 174 | 87 | 28.74 | 2472 | 685 |
exon 14 | exon 13 | 8 | 7 | 117231914 | 117232756 | 843 | 724 | 40.88 | 8044 | 1770 |
exon 15 | exon 14a | 3 | 7 | 117234856 | 117235173 | 318 | 129 | 37.98 | 2200 | 572 |
exon 16 | exon 14b | 1 | 7 | 117242841 | 117242978 | 138 | 28 | 52.63 | 10428 | 3268 |
exon 17 | exon 15 | 3 | 7 | 117243554 | 117243887 | 334 | 251 | 41.04 | 11254 | 2708 |
exon 18 | exon 16 | 2 | 7 | 117246632 | 117246865 | 234 | 80 | 37.5 | 2422 | 653 |
exon 19 | exon 17a | 2 | 7 | 117250542 | 117250813 | 272 | 151 | 39.07 | 3944 | 901 |
exon 20 | exon 17b | 3 | 7 | 117251517 | 117251995 | 479 | 228 | 40.79 | 3318 | 660 |
exon 21 | exon 18 | 1 | 7 | 117254609 | 117254804 | 196 | 101 | 42.57 | 3741 | 691 |
exon 22 | exon 19 | 4 | 7 | 117267539 | 117267885 | 347 | 250 | 42.97 | 7265 | 1831 |
intron 22 | intron 19 | 1 | 7 | 117279950 | 117280047 | 98 | n/a | n/a | 4677 | 1872 |
exon 23 | exon 20 | 3 | 7 | 117282467 | 117282755 | 289 | 156 | 44.87 | 7179 | 1671 |
exon 24 | exon 21 | 2 | 7 | 117292796 | 117293076 | 281 | 90 | 32.22 | 2681 | 510 |
exon 25/intron 25 | exon 22/intron 22 | 3 | 7 | 117304586 | 117304966 | 381 | 173 | 49.71 | 9076 | 2349 |
exon 26 | exon 23 | 2 | 7 | 117305458 | 117305793 | 336 | 106 | 34.91 | 5435 | 831 |
exon 27/3′UTR | exon 24/3′UTR | 18 | 7 | 117306891 | 117308755 | 1865 | 1758 | 52.24 | 6876 | 1555 |
