Table 2 De novo assembly statistics of avocado, macadamia and mango transcriptomes before (Trinity output) and after redundancy reduction (Unigenes).
From: De novo transcriptome assembly and annotation for gene discovery in avocado, macadamia and mango
| Â | Avocado | Macadamia | Mango | |||
|---|---|---|---|---|---|---|
Trinity output | Unigenes | Trinity output | Unigenes | Trinity output | Unigenes | |
# contigs (>=0 bp) | 249765 | 63420 | 225591 | 78871 | 251204 | 82198 |
# contigs (>=1000 bp) | 42988 | 10981 | 17643 | 4464 | 44854 | 10694 |
# contigs (>=5000 bp) | 28 | 2 | 0 | 0 | 14 | 1 |
Total length (>=0 bp) | 154556593 | 41442153 | 106195638 | 40705830 | 156057297 | 49246959 |
Total length (>=1000 bp) | 69201144 | 16247577 | 23529519 | 5499159 | 72163715 | 15228411 |
Total length (>=5000 bp) | 153870 | 11058 | 0 | 0 | 76292 | 5547 |
# contigs | 100110 | 28816 | 68025 | 29090 | 98975 | 34564 |
Largest contig | 6121 | 5700 | 3594 | 3219 | 6179 | 5547 |
Total length | 109464144 | 28572369 | 58255825 | 22035423 | 110183488 | 31425165 |
GC (%) | 43.33 | 46.89 | 45.09 | 48.29 | 41.82 | 45.58 |
N50 | 1239 | 1104 | 888 | 756 | 1292 | 978 |
N75 | 817 | 744 | 663 | 606 | 839 | 675 |
L50 | 29949 | 9111 | 23589 | 10869 | 29822 | 11184 |
L75 | 57262 | 16985 | 42633 | 19050 | 56299 | 20938 |
# N’s per 100 kbp | 0 | 0 | 0 | 0 | 0 | 0 |
