Table 3 Summary statistics of the BUSCO analysis of two coast redwood transcriptome de novo assemblies generated using Trinity and CLC Genomics Workbench software.
Transcriptome assembly | Trinity | CLC |
|---|---|---|
Viridiplantae dataset | ||
Complete BUSCOs | 397 (93.4%) | 205 (48.2%) |
Complete and single copy BUSCOs | 136 (32.0%) | 176 (41.4%) |
Complete and duplicated BUSCOs | 261 (61.4%) | 29 (6.8%) |
Fragmented BUSCOs | 25 (5.9%) | 186 (43.8%) |
Missing BUSCOs | 3 (0.7%) | 34 (8.0%) |
Total BUSCO groups searched | 425 | 425 |
Embryophyta dataset | ||
Complete BUSCOs | 1409 (87.3%) | 570 (35.3%) |
Complete and single copy BUSCOs | 517 (32.0%) | 509 (31.5%) |
Complete and duplicated BUSCOs | 892 (55.3%) | 61 (3.8%) |
Fragmented BUSCOs | 87 (5.4%) | 491 (30.4%) |
Missing BUSCOs | 118 (7.3%) | 553 (34.3%) |
Total BUSCO groups searched | 1614 | 1614 |
