Table 6 Assessment of completeness of constructed transcriptomes.
From: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato
cv. Désirée | initial rep+alt | post 1st filtering rep+alt | final rep+alt |
|---|---|---|---|
(S) | 37.8 | 37.8 | 37.4 |
(D) | 59.4 | 59.2 | 58.4 |
(C) | 97.2 | 97.0 | 95.8 |
(F) | 1.1 | 1.2 | 1.4 |
(M) | 1.7 | 1.8 | 2.8 |
breeding clone PW363 | initial rep+alt | post 1st filtering rep+alt | final rep+alt |
(S) | 39.9 | 39.2 | 38.4 |
(D) | 51.7 | 51.2 | 50.9 |
(C) | 91.6 | 90.4 | 89.3 |
(F) | 2.9 | 3.4 | 3.5 |
(M) | 5.6 | 6.2 | 7.2 |
cv. Rywal | initial rep+alt | post 1st filtering rep+alt | final rep+alt |
(S) | 55.8 | 55.8 | 55.1 |
(D) | 35.2 | 34.8 | 34.7 |
(C) | 91.0 | 90.6 | 89.8 |
(F) | 2.4 | 2.6 | 2.7 |
(M) | 6.5 | 6.9 | 7.5 |
pan-transcriptome | rep | alt | rep+alt |
(S) | 92.2 | 11.0 | 3.9 |
(D) | 6.1 | 85.9 | 95.6 |
(C) | 98.3 | 96.9 | 99.4 |
(F) | 1.4 | 1.3 | 0.3 |
(M) | 0.3 | 1.7 | 0.3 |
