Online-only Table 1 Summary of PacBio and Illumina genome sequencing data for 30 streptomycetes.

From: Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters

No.	Species	Strain	Platform	Raw reads (No.)	Mean raw reads length (bp)	Clean reads (No.)	Mean clean reads length (bp)	SRA accession number
1	Streptomyces clavuligerus	ATCC27064	Illumina	9,853,205	100	9,852,872	100	SRR9192366
1	Streptomyces clavuligerus	ATCC27064	pacBio	150,292	6,572	60,834	15,473	SRR9290551
2	Streptomyces tsukubaensis	NRRL18488	Illumina	9,181,843	50	9,176,299	50	SRR9192343
2	Streptomyces tsukubaensis	NRRL18488	pacBio	150,292	8,163	93,481	12,715	SRR9290550
3	Streptomyces galilaeus	ATCC14969	Illumina	15,603,988	100	15,603,366	100	SRR9192357
3	Streptomyces galilaeus	ATCC14969	pacBio	150,292	5,458	95,691	8,339	SRR9290549
4	Streptomyces nitrosporeus	ATCC12769	Illumina	15,858,551	100	15,857,973	100	SRR9192358
4	Streptomyces nitrosporeus	ATCC12769	pacBio	150,292	5,007	101,572	7,222	SRR9290548
5	Streptomyces subrutilus	ATCC27467	Illumina	23,157,475	100	23,157,337	100	SRR9192359
5	Streptomyces subrutilus	ATCC27467	pacBio	150,292	8,757	92,569	13,591	SRR9290547
6	Streptomyces viridosporus T7A	ATCC39115	Illumina	24,919,393	100	24,918,458	100	SRR9192360
6	Streptomyces viridosporus T7A	ATCC39115	pacBio	150,292	7,910	92,139	12,571	SRR9290546
7	Streptomyces kanamyceticus	ATCC12853	Illumina	14,877,606	100	14,877,044	100	SRR9192361
7	Streptomyces kanamyceticus	ATCC12853	pacBio	150,292	5,044	59,627	12,291	SRR9290545
8	Streptomyces aureofaciens	ATCC11989	Illumina	19,155,832	100	19,155,718	100	SRR9192362
8	Streptomyces aureofaciens	ATCC11989	pacBio	150,292	5,890	88,462	9,681	SRR9290544
9	Streptomyces prasinus	ATCC13879	Illumina	18,655,418	100	18,654,718	100	SRR9192388
9	Streptomyces prasinus	ATCC13879	pacBio	150,292	5,560	84,107	9,288	SRR9290553
10	Streptomyces fradiae	ATCC10745	Illumina	9,446,513	100	9,445,832	100	SRR9192354
10	Streptomyces fradiae	ATCC10745	pacBio	150,292	6,843	94,568	10,538	SRR9290561
11	Streptomyces alboniger	ATCC12461	Illumina	16,425,356	100	16,425,241	100	SRR9192355
11	Streptomyces alboniger	ATCC12461	pacBio	300,584	3,638	159,270	6,351	SRR9290560
12	Streptomyces coeruleorubidus	ATCC13740	Illumina	17,546,981	100	17,546,866	100	SRR9192339
12	Streptomyces coeruleorubidus	ATCC13740	pacBio	300,584	2,836	121,377	6,164	SRR9290563
13	Streptomyces cinereoruber	ATCC19740	Illumina	20,182,754	100	20,181,890	100	SRR9192340
13	Streptomyces cinereoruber	ATCC19740	pacBio	150,292	3,319	52,279	9,266	SRR9290562
14	Streptomyces nodosus	ATCC14899	Illumina	14,034,927	100	14,034,843	100	SRR9192341
14	Streptomyces nodosus	ATCC14899	pacBio	150,292	8,387	94,719	12,692	SRR9290557
15	Streptomyces vinaceus	ATCC27476	Illumina	6,612,160	100	6,610,219	100	SRR9192335
15	Streptomyces vinaceus	ATCC27476	pacBio	150,292	4,984	75,928	9,432	SRR9290559
16	Streptomyces platensis	ATCC23948	Illumina	14,819,357	100	14,819,243	100	SRR9192336
16	Streptomyces platensis	ATCC23948	pacBio	150,292	4,869	72,573	9,619	SRR9290558
17	Streptomyces spectabilis	ATCC27465	Illumina	18,717,018	100	18,716,280	100	SRR9192337
17	Streptomyces spectabilis	ATCC27465	pacBio	300,584	10,049	202,966	14,047	SRR9290555
18	Streptomyces chartreusis	ATCC14922	Illumina	16,988,966	100	16,988,850	100	SRR9192338
18	Streptomyces chartreusis	ATCC14922	pacBio	150,292	8,813	88,869	14,106	SRR9290554
19	Stretpomyces rimosus	ATCC10970	Illumina	25,109,758	100	25,108,764	100	SRR9192333
19	Stretpomyces rimosus	ATCC10970	pacBio	300,584	7,066	164,891	12,342	SRR9290564
20	Streptomyces albofaciens	ATCC23873	Illumina	19,360,703	100	19,360,564	100	SRR9192364
20	Streptomyces albofaciens	ATCC23873	pacBio	150,292	11,091	110,521	14,419	SRR9290552
21	Streptomyces filamentosus	ATCC23958	Illumina	21,181,460	100	21,180,615	100	SRR9192342
21	Streptomyces filamentosus	ATCC23958	pacBio	150,292	4,805	70,677	8,178	SRR9290556
22	Streptomyces venezuelae ATCC 10712	ATCC 10712	Illumina	18,667,122	100	18,664,663	100	SRR9192374
22	Streptomyces venezuelae ATCC 10712	ATCC 10712	pacBio	150,292	9,101	87,860	15,328	SRR9290565
23	Streptomyces venezuelae ATCC 21113	ATCC 21113	Illumina	21,561,533	100	21,559,491	100	SRR9192334
23	Streptomyces venezuelae ATCC 21113	ATCC 21113	pacBio	150,292	10,148	104,695	14,180	SRR9290566
24	Streptomyces venezuelae ATCC 10595	ATCC 10595	Illumina	16,798,923	100	16,797,236	100	SRR9192369
24	Streptomyces venezuelae ATCC 10595	ATCC 10595	pacBio	150,292	7,829	92,681	12,197	SRR9290567
25	Streptomyces venezuelae ATCC 15068	ATCC 15068	Illumina	15,310,620	100	15,308,905	100	SRR9192368
25	Streptomyces venezuelae ATCC 15068	ATCC 15068	pacBio	150,292	10,754	107,412	14,515	SRR9290568
26	Streptomyces venezuelae ATCC 14583	ATCC 14583	Illumina	19,423,668	100	19,421,332	100	SRR9192371
26	Streptomyces venezuelae ATCC 14583	ATCC 14583	pacBio	150,292	10,888	106,813	14,647	SRR9290569
27	Streptomyces venezuelae ATCC 14584	ATCC 14584	Illumina	15,447,783	100	15,446,240	100	SRR9192370
27	Streptomyces venezuelae ATCC 14584	ATCC 14584	pacBio	150,292	8,844	100,523	12,580	SRR9290540
28	Streptomyces venezuelae ATCC 14585	ATCC 14585	Illumina	51,795,644	100	51,791,331	100	SRR9192373
28	Streptomyces venezuelae ATCC 14585	ATCC 14585	pacBio	150,292	8,275	96,243	12,388	SRR9290541
29	Streptomyces venezuelae ATCC 21782	ATCC 21782	Illumina	19,569,337	100	19,567,069	100	SRR9192372
29	Streptomyces venezuelae ATCC 21782	ATCC 21782	pacBio	150,292	6,539	70,655	13,089	SRR9290542
30	Streptomyces venezuelae ATCC 21018	ATCC 21018	Illumina	16,469,406	100	16,467,790	100	SRR9192375
30	Streptomyces venezuelae ATCC 21018	ATCC 21018	pacBio	150,292	10,754	107,412	14,515	SRR9290543

Back to article page

Online-only Table 1 Summary of PacBio and Illumina genome sequencing data for 30 streptomycetes.

Search

Quick links