Online Table 5 Super-enhancer-associated transcription factor comparisons.

From: Epigenomic profiling of neuroblastoma cell lines

ADRN SE

Cell Lines using ROSE

Cell Lines using LILY

Cell Lines using Both

ASCL1

COG-N-415, SK-N-FI

COG-N-415, LA-N-5, NB-1643, SK-N-BE(2)C, SK-N-FI

COG-N-415, LA-N-5, NB-1643, SK-N-BE(2)C, SK-N-FI

DACH1

 

SK-N-AS, SK-N-FI

SK-N-AS, SK-N-FI

EYA1

   

GATA2

   

GATA3

COG-N-415, KELLY, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI, SK-N-SH

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

HAND1

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

HEY1

   

ISL1

SK-N-FI

 

SK-N-FI

KLF13

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

KLF7

NB-69, SK-N-AS, SK-N-BE(2)C

COG-N-415, LA-N-5, NB-69, NB-1643, NGP, SK-N-AS, SK-N-BE(2)C

COG-N-415, LA-N-5, NB-69, NB-1643, NGP, SK-N-AS, SK-N-BE(2)C

PBX3

 

SK-N-FI

SK-N-FI

PHOX2A

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI, SK-N-SH

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI

PHOX2B

COG-N-415, KELLY, LA-N-5, NB-LS, SK-N-AS, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI

SATB1

 

COG-N-415, LA-N-5

COG-N-415, LA-N-5

SIX3

NGP, SK-N-BE(2)C

 

NGP, SK-N-BE(2)C

SOX11

NGP

LA-N-5

LA-N-5, NGP

TFAP2B

COG-N-415, KELLY, LA-N-5, NB-69, NB-LS, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI

COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI

ZNF536

LA-N-5, NB-69, NB-1643, NGP

LA-N-5, NB-69, NB-1643, NGP

LA-N-5, NB-69, NB-1643, NGP

MES SE

Cell Lines using ROSE

Cell Lines using LILY

Cell Lines using Both

AEBP1

 

SK-N-SH

SK-N-SH

CBFB

   

CREG1

   

DCAF6

   

EGR3

   

ELK4

   

ID1

   

IFI16

   

MAML2

   

MEOX1

   

MEOX2

   

NOTCH2

   

PRRX1

SK-N-SH

SK-N-SH

SK-N-SH

SIX1

SK-N-SH

SK-N-SH

SK-N-SH

SIX4

   

SMAD3

LA-N-5, SK-N-AS, SK-N-SH

LA-N-5, SK-N-AS, SK-N-SH

LA-N-5, SK-N-AS, SK-N-SH

SOX9

   

WWTR1

   

ZFP36L1

   

ZNF217

KELLY, SK-N-AS, SK-N-FI, SK-N-SH

 

KELLY, SK-N-AS, SK-N-FI, SK-N-SH

  1. Adrenergic and mesenchymal lineage-specific SEs defined by Gronigen, et. al. and the neuroblastoma cell lines listed per gene in which SEs were called.
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