Table 1 List of preprocessing steps applied to the T1w images, together with web links to relevant software and, if available, brainlife.io Apps.

From: CHIASM, the human brain albinism and achiasma MRI dataset

Preprocessing step

Software/Tool

Software website/App

1. DICOM conversion

dcm2niix

http://people.cas.sc.edu/rorden/mricron/dcm2nii.html

2. Anonymization

FreeSurfer 6.0.0/mri_deface

https://surfer.nmr.mgh.harvard.edu/fswiki/mri_deface

3. ACPC Alignment

mrDiffusion/mrAnatAverageAcPcNifti

https://github.com/vistalab/vistasoft

4. Tissue Segmentation

MRtrix 3.0/5ttgen

https://www.mrtrix.org

5. Tissue segmentation

FreeSurfer 7.1.1/recon-all

https://surfer.nmr.mgh.harvard.edu

https://doi.org/10.25663/brainlife.app.462124

  1. Web services used to process that are available for reuse on https://brainlife.io/apps.
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