Online-only Table 1 RNA sample quality and statistics of sequencing data for each sample in this study. Mapping rate = mapped reads*100/clean reads.
Sample id | genotype | treatment | tissue | raw reads | clean reads | mapped reads | mapping rate (%) | accession | SRP number |
|---|---|---|---|---|---|---|---|---|---|
pn-gxd001 | french | control | dev. xylem | 26347794 | 26219083 | 24873295 | 94.9 | SRS1884972 | SRP095832 |
pn-gxd002 | french | control | dev. xylem | 21968470 | 21834252 | 20653438 | 94.6 | SRS1884983 | SRP095832 |
pn-gxd003 | french | control | dev. xylem | 25535311 | 25432719 | 24082611 | 94.7 | SRS1884974 | SRP095832 |
pn-gxd004 | french | control | dev. xylem | 24944154 | 24788885 | 23425381 | 94.5 | SRS1884973 | SRP095832 |
pn-gxd005 | french | drought | dev. xylem | 25869206 | 25760917 | 24485336 | 95.0 | SRS1884981 | SRP095832 |
pn-gxd006 | french | drought | dev. xylem | 23306794 | 23187681 | 22037346 | 95.0 | SRS1884979 | SRP095832 |
pn-gxd007 | french | drought | dev. xylem | 21117296 | 21016671 | 19963358 | 95.0 | SRS1884976 | SRP095832 |
pn-gxd008 | french | drought | dev. xylem | 24135455 | 24027452 | 22816016 | 95.0 | SRS1884971 | SRP095832 |
pn-gxd009 | italian | control | dev. xylem | 25450632 | 25336566 | 24023585 | 94.8 | SRS1884984 | SRP095832 |
pn-gxd010 | italian | control | dev. xylem | 26200813 | 26077867 | 24651881 | 94.5 | SRS1884988 | SRP095832 |
pn-gxd011 | italian | control | dev. xylem | 29039279 | 28872821 | 27344418 | 94.7 | SRS1884980 | SRP095832 |
pn-gxd012 | italian | control | dev. xylem | 29053229 | 6604984 | 6272729 | 95.0 | SRS1884989 | SRP095832 |
pn-gxd013 | italian | drought | dev. xylem | 28736494 | 28634231 | 27191223 | 95.0 | SRS1884970 | SRP095832 |
pn-gxd014 | italian | drought | dev. xylem | 25835119 | 25727073 | 24378290 | 94.8 | SRS1884977 | SRP095832 |
pn-gxd015 | italian | drought | dev. xylem | 28049709 | 27967115 | 26538506 | 94.9 | SRS1884987 | SRP095832 |
pn-gxd016 | italian | drought | dev. xylem | 43867708 | 43711448 | 41400778 | 94.7 | SRS1884968 | SRP095832 |
pn-gxd017 | spanish | control | dev. xylem | 28646361 | 28525127 | 26891792 | 94.3 | SRS1884969 | SRP095832 |
pn-gxd018 | spanish | control | dev. xylem | 21823529 | 21741207 | 20586916 | 94.7 | SRS1884975 | SRP095832 |
pn-gxd019 | spanish | control | dev. xylem | 23440039 | 23337400 | 22069986 | 94.6 | SRS1884978 | SRP095832 |
pn-gxd020 | spanish | control | dev. xylem | 31885434 | 31742276 | 30077787 | 94.8 | SRS1884986 | SRP095832 |
pn-gxd021 | spanish | drought | dev. xylem | 22199898 | 22103367 | 20891792 | 94.5 | SRS1884982 | SRP095832 |
pn-gxd022 | spanish | drought | dev. xylem | 24478986 | 24372000 | 23044491 | 94.6 | SRS1884967 | SRP095832 |
pn-gxd023 | spanish | drought | dev. xylem | 40288279 | 40147251 | 37981915 | 94.6 | SRS1884966 | SRP095832 |
pn-gxd024 | spanish | drought | dev. xylem | 23706143 | 23583673 | 22293829 | 94.5 | SRS1884985 | SRP095832 |
pn-gxd025 | french | control | fine roots | 18475623 | 18379495 | 17017509 | 92.6 | SRS2041050 | SRP101711 |
pn-gxd026 | french | control | fine roots | 26708244 | 26578726 | 24589206 | 92.5 | SRS2041049 | SRP101711 |
pn-gxd027 | french | drought | fine roots | 20093157 | 20002204 | 18847673 | 94.2 | SRS2041048 | SRP101711 |
pn-gxd028 | french | drought | fine roots | 40295194 | 40123126 | 37503428 | 93.5 | SRS2041046 | SRP101711 |
pn-gxd029 | italian | control | fine roots | 20057078 | 19977533 | 18660761 | 93.4 | SRS2041047 | SRP101711 |
pn-gxd030 | italian | control | fine roots | 35300719 | 18679546 | 16624171 | 89.0 | SRS2041045 | SRP101711 |
pn-gxd031 | italian | drought | fine roots | 32071191 | 31904918 | 29698037 | 93.1 | SRS2041044 | SRP101711 |
pn-gxd032 | italian | drought | fine roots | 28132587 | 28011787 | 26142944 | 93.3 | SRS2041043 | SRP101711 |
pn-gxd033 | spanish | control | fine roots | 21947960 | 21850864 | 20520694 | 93.9 | SRS2041042 | SRP101711 |
pn-gxd034 | spanish | control | fine roots | 23484410 | 23384451 | 21969301 | 93.9 | SRS2041041 | SRP101711 |
pn-gxd035 | spanish | drought | fine roots | 24674183 | 24570824 | 23027334 | 93.7 | SRS2041040 | SRP101711 |
pn-gxd036 | spanish | drought | fine roots | 25154915 | 25061134 | 23472214 | 93.7 | SRS2041039 | SRP101711 |
pn-gxd037 | french | control | fine roots | 22974804 | 22865346 | 21355856 | 93.4 | SRS2041038 | SRP101711 |
pn-gxd038 | french | control | fine roots | 26195431 | 26072182 | 24281472 | 93.1 | SRS2041037 | SRP101711 |
pn-gxd039 | french | drought | fine roots | 20610252 | 20514602 | 19152381 | 93.4 | SRS2041036 | SRP101711 |
pn-gxd040 | french | drought | fine roots | 20035140 | 19931441 | 18093161 | 90.8 | SRS2041035 | SRP101711 |
pn-gxd041 | italian | control | fine roots | 28268920 | 28164055 | 26344897 | 93.5 | SRS2041034 | SRP101711 |
pn-gxd042 | italian | control | fine roots | 19010791 | 18944333 | 17664174 | 93.2 | SRS2041033 | SRP101711 |
pn-gxd043 | italian | drought | fine roots | 17776436 | 17706309 | 16476970 | 93.1 | SRS2041032 | SRP101711 |
pn-gxd044 | italian | drought | fine roots | 17781760 | 17692051 | 15716453 | 88.8 | SRS2041031 | SRP101711 |
pn-gxd045 | spanish | control | fine roots | 18083933 | 17999123 | 16886475 | 93.8 | SRS2041029 | SRP101711 |
pn-gxd046 | spanish | control | fine roots | 22195654 | 22101928 | 20712694 | 93.7 | SRS2041030 | SRP101711 |
pn-gxd047 | spanish | drought | fine roots | 27659146 | 27545602 | 25615449 | 93.0 | SRS2041028 | SRP101711 |
pn-gxd048 | spanish | drought | fine roots | 22454164 | 22340090 | 20994158 | 94.0 | SRS2041027 | SRP101711 |
pn-gxd049 | french | control | leaf | 20060742 | 19948501 | 18726886 | 93.9 | SRS2041026 | SRP101711 |
pn-gxd050 | french | control | leaf | 17726230 | 17618729 | 16588220 | 94.2 | SRS2041025 | SRP101711 |
pn-gxd051 | french | drought | leaf | 17135319 | 17066132 | 16131181 | 94.5 | SRS2041024 | SRP101711 |
pn-gxd052 | french | drought | leaf | 27662673 | 27551365 | 25997698 | 94.4 | SRS2041023 | SRP101711 |
pn-gxd053 | italian | control | leaf | 20753033 | 20664242 | 19537479 | 94.5 | SRS2041022 | SRP101711 |
pn-gxd054 | italian | control | leaf | 20742033 | 20644890 | 19512057 | 94.5 | SRS2041021 | SRP101711 |
pn-gxd055 | italian | drought | leaf | 17856205 | 17775191 | 16838355 | 94.7 | SRS2041020 | SRP101711 |
pn-gxd056 | italian | drought | leaf | 18688040 | 18581365 | 17589133 | 94.7 | SRS2041019 | SRP101711 |
pn-gxd057 | spanish | control | leaf | 18482734 | 18406176 | 17383881 | 94.4 | SRS2041018 | SRP101711 |
pn-gxd058 | spanish | control | leaf | 20083897 | 20006120 | 18929749 | 94.6 | SRS2041017 | SRP101711 |
pn-gxd059 | spanish | drought | leaf | 19171934 | 19095469 | 18048113 | 94.5 | SRS2041016 | SRP101711 |
pn-gxd060 | spanish | drought | leaf | 19690261 | 19617084 | 18523190 | 94.4 | SRS2041015 | SRP101711 |
pn-gxd061 | french | control | leaf | 18942527 | 18836396 | 17702990 | 94.0 | SRS2041013 | SRP101711 |
pn-gxd062 | french | control | leaf | 19442585 | 19330313 | 18143930 | 93.9 | SRS2041014 | SRP101711 |
pn-gxd063 | french | drought | leaf | 31703424 | 31569834 | 29696014 | 94.1 | SRS2041011 | SRP101711 |
pn-gxd064 | french | drought | leaf | 19625738 | 19519758 | 18289694 | 93.7 | SRS2041012 | SRP101711 |
pn-gxd065 | italian | control | leaf | 20237232 | 20135453 | 19002250 | 94.4 | SRS2041010 | SRP101711 |
pn-gxd066 | italian | control | leaf | 31513962 | 31364880 | 29611859 | 94.4 | SRS2041009 | SRP101711 |
pn-gxd067 | italian | drought | leaf | 20359403 | 20254957 | 19113711 | 94.4 | SRS2041007 | SRP101711 |
pn-gxd068 | italian | drought | leaf | 23370237 | 23253368 | 21970933 | 94.5 | SRS2041008 | SRP101711 |
pn-gxd069 | spanish | control | leaf | 22973019 | 22864102 | 21561281 | 94.3 | SRS2041005 | SRP101711 |
pn-gxd070 | spanish | control | leaf | 24991988 | 24866395 | 23460473 | 94.3 | SRS2041003 | SRP101711 |
pn-gxd071 | spanish | drought | leaf | 33555678 | 33431609 | 31557396 | 94.4 | SRS2041006 | SRP101711 |
pn-gxd072 | spanish | drought | leaf | 20313704 | 20233878 | 19147530 | 94.6 | SRS2041004 | SRP101711 |
