Table 5 Classification of repeat elements in C. erythropterus genome.
From: A chromosome-level genome assembly of the redfin culter (Chanodichthys erythropterus)
Type | Denovo + Repbase | TE Proteins | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | |
DNA | 58,226,942 | 5.36 | 7,413,708 | 0.68 | 62,122,195 | 5.72 |
LINE | 7,641,127 | 0.70 | 16,986,628 | 1.56 | 20,557,781 | 1.89 |
SINE | 1,634,833 | 0.15 | 0 | 0 | 1,634,833 | 0.15 |
LTR | 467,225,494 | 43.04 | 32,239,687 | 2.97 | 469,221,600 | 43.23 |
Unknown | 21,969,188 | 2.02 | 0 | 0 | 21,969,188 | 2.02 |
Total | 551,340,511 | 50.79 | 56,626,202 | 5.22 | 557,279,616 | 51.34 |
