Table 1 NeuroLINCS data publicly released. A, available; n/a, not available.
From: NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency
Cell type | Cell Line | Diagnosis | Differentiaion protocol | ATAC-Seq | RNA-Seq | DIA-MS Proteomics | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Leve l | Leve 3 | Leve 4 | Leve 1 | Leve 3 | Leve 4 | Leve 0 | Leve 2 | Leve 3 | Leve 4 | ||||
iPSC | CS14iCTR-n6 | Control | none | A | A | A | A | A | A | A | A | A | A |
CS25iCTR-18n2 | Control | none | A | A | A | A | A | A | A | A | A | A | |
CS83iCTR-33n1 | Control | none | A | A | A | A | A | A | A | A | A | A | |
CS28iALS-n2A | ALS - C9orf72 | none | A | A | A | A | A | A | A | A | A | A | |
CS29iALS-n1N | ALS - C9orf72 | none | A | A | A | A | A | A | A | A | A | A | |
CS30iALS-n1A | ALS - C9orf72 | none | A | A | A | A | A | A | A | A | A | A | |
CS52iALS-n6A | ALS - C9orf72 | none | n/a | n/a | n/a | A | A | A | A | A | A | A | |
CS32iSMA-n3 | SMA Type I | none | A | A | A | A | A | A | A | A | A | A | |
CS77iSMA-n5 | SMA Type I | none | A | A | A | A | A | A | A | A | A | A | |
CS83iSMA-n5 | SMA Type I | none | A | A | A | A | A | A | A | A | A | A | |
iMNs | CS00iCTR_iMNS | Control | Long | A | A | A | A | A | A | A | A | A | A |
CS25iCTR_iMNS | Control | Long | A | A | A | A | A | A | A | A | A | A | |
CS83iCTR_iMNS | Control | Long | A | A | A | A | A | A | A | A | A | A | |
CS28iALS_iMNS | ALS - C9orf72 | Long | A | A | A | A | A | A | A | A | A | A | |
CS29iALS_iMNS | ALS - C9orf72 | Long | A | A | A | A | A | A | A | A | A | A | |
CS30iALS_iMNS | ALS - C9orf72 | Long | A | A | A | A | A | A | A | A | A | A | |
CS52iALS_iMNS | ALS - C9orf72 | Long | A | A | A | A | A | A | A | A | A | A | |
CS32iSMA_iMNS | SMA Type I | Long | A | A | A | A | A | A | A | A | A | A | |
CS77iSMA_iMNS | SMA Type I | Long | A | A | A | A | A | A | A | A | A | A | |
CS83iSMA_iMNS | SMA Type I | Long | A | A | A | A | A | A | A | A | A | A | |
diMNs | CS00iCTR_diMNS | Control | Short | A | A | A | A | A | A | A | A | A | A |
CS14iCTR_diMNS | Control | Short | A | A | A | A | A | A | A | A | A | A | |
CS25iCTR_diMNS | Control | Short | A | A | A | A | A | A | n/a | n/a | n/a | n/a | |
CS83iCTR_diMNS | Control | Short | A | A | A | A | A | A | n/a | n/a | n/a | n/a | |
CS04iALS_diMNS | ALS - SOD1 | Short | A | A | A | A | A | A | A | A | A | A | |
CS11iALS_diMNS | ALS - SOD1 | Short | A | A | A | A | A | A | A | A | A | A | |
CS14iALS_diMNS | ALS - SOD1 | Short | A | A | A | A | A | A | A | A | A | A | |
CS22iALS_diMNS | ALS - SOD1 | Short | A | A | A | A | A | A | A | A | A | A | |
CS28iALS_diMNS | ALS - C9orf72 | Short | A | A | A | A | A | A | A | A | A | A | |
CS29iALS_diMNS | ALS - C9orf72 | Short | A | A | A | A | A | A | A | A | A | A | |
CS30iALS_diMNS | ALS - C9orf72 | Short | A | A | A | A | A | A | A | A | A | A | |
CS52iALS_diMNS | ALS - C9orf72 | Short | A | A | A | A | A | A | A | A | A | A | |
CS138isALS_diMNS | ALS - Sporadic | Short | A | A | A | A | A | A | A | A | A | A | |
CS152isALS_diMNS | ALS - Sporadic | Short | A | A | A | A | A | A | A | A | A | A | |
CS166iALS_diMNS | ALS - Sporadic | Short | A | A | A | A | A | A | A | A | A | A | |
CS32iSMA_diMNS | SMA Type I | Short | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | |
CS77iSMA_diMNS | SMA Type I | Short | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | |
CS83iSMA_diMNS | SMA Type I | Short | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | |
