Table 2 Summary of comparisons of pf3 v1.1 assembly and B227 assembly.
From: A chromosome-level reference genome of the wax gourd (Benincasa hispida)
Type | pf3 v1.1 | B227 |
|---|---|---|
Total size of assembled scaffolds | 975.62 Mb | 912.95 Mb |
GC content | 34.94% | 34.85% |
Number of scaffolds | 1,862 | 2,197 |
Largest scaffold | 102.24 Mb | 14.5 Mb |
Scaffold N50 | 70.97 Mb | 3.4 Mb |
Scaffold L50 | 6 | Not available |
N’s per 100 kbp | 77.03 | 1,618.82 |
Total size of assembled contigs | 974.87 Mb | 898.17 Mb |
Number of contigs | 1,897 | 26,315 |
Largest contig | 24.91 Mb | Not available |
Contig N50 | 2.43 Mb | 68.5 Kb |
Contig L50 | 95 | Not available |
Anchored to chromosome | 926.05 Mb | 859 Mb |
Mapping back rate of Illumina reads | 99.38% | 99.83% |
Mapping back rate of PacBio reads | 98.42% | 97.02% |
