Table 2 Repetitive elements and their proportions in diploid Actinidia chinensis var. deliciosa genome.
From: Chromosome-scale genome assembly of a natural diploid kiwifruit (Actinidia chinensis var. deliciosa)
Repeat family | De novo + Repbase | TE proteins | Combined Tes | |||
|---|---|---|---|---|---|---|
Length (bp) | Proportion in genome (%) | Length (bp) | Proportion in genome (%) | Length (bp) | Proportion in genome (%) | |
DNA transposons | 3,819,086 | 0.61 | 126,403 | 0.02 | 3,881,658 | 0.62 |
LINE | 1,865,614 | 0.3 | 140,320 | 0.02 | 1,915,779 | 0.31 |
SINE | 10,314 | 0 | 0 | 0 | 10,314 | 0 |
LTR | ######## | 34.87 | 46,054,847 | 7.4 | ######## | 35.55 |
Unknown | 30,012,173 | 4.83 | 0 | 0 | 30,012,173 | 4.83 |
Total (TRF not included) | ######## | 40.06 | 46,321,434 | 7.45 | ######## | 40.58 |
