Fig. 3 | Scientific Data

Fig. 3

From: A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging

Fig. 3

Blood vessel segmentation workflow. (a) Raw image volumes from 2PFM imaging went through a series of (b) preprocessing steps, followed by manual corrections conducted in 3D Slicer46. (c) These segmented image volumes were further refined by using a 2D U-Net, which outputs (d) segmented image volumes. Raw and segmented image volumes, and code for preprocessing and U-Net workflows are provided.

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