Table 2 Comparison of the genome-wide statistics for annotations of groupers.
From: Improved chromosomal-level genome assembly and re-annotation of leopard coral grouper
P. leopardus | E. fuscoguttatus | E. lanceolatus | E. moara | ||||
|---|---|---|---|---|---|---|---|
This study | Zhou et al. | Wang et al. | Yang et al. | ||||
Number of protein-coding genes | 25,965 | 25,763 | 24,700 | 22,317 | 23,813 | 24,067 | 23,588 |
Average gene length (bp) | 15,512 | 15,894 | 16,882 | 20,758 | 22,277 | 21,997 | 21,583 |
Average exon length (bp) | 174 | 171 | 183 | 276 | 175 | 174 | 174 |
Average exon number per gene | 9.2 | 8.4 | 8.7 | 11.2 | 10.5 | 10.3 | 10.4 |
Average intron length (bp) | 1,840 | 1,688 | 1,879 | 1,890 | 2,148 | 2,146 | 2,094 |
Percentage of repeat sequence (%) | 37.35 | 33.91 | 38.02 | 36.18 | 41.28 | 40.17 | 38.85 |
LTR (%) | 1.69 | 1.35 | 2.68 | 2.12 | 5.18 | 3.68 | 3.45 |
LINE (%) | 3.21 | 2.87 | 3.45 | 3.24 | 4.84 | 4.67 | 4.16 |
SINE (%) | 0.40 | 0.39 | 2.17 | 0.42 | 0.48 | 0.50 | 0.51 |
DNA transposons (%) | 13.58 | 11.35 | 12.80 | 12.79 | 16.60 | 16.82 | 15.87 |
