Table 10 Repetitive elements and their proportions in A. baeri genome.
From: Chromosome-level genome assembly of the critically endangered Baer’s pochard (Aythya baeri)
Type | Denovo + Repbase | TE Proteins | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | Percentage (%) | Length (bp) | Percentage (%) | Length (bp) | Percentage (%) | |
DNA | 1,516,832 | 0.13 | 230,564 | 0.02 | 1,726,412 | 0.15 |
LINE | 92,362,357 | 8.07 | 49,394,908 | 4.31 | 100,765,525 | 8.80 |
SINE | 154,947 | 0.01 | 0 | 0 | 154,947 | 0.01 |
LTR | 45,132,101 | 3.94 | 8,899,775 | 0.78 | 47,262,135 | 4.13 |
Unknown | 5,157,967 | 0.45 | 0 | 0 | 5,157,967 | 0.45 |
Total | ######### | 11.90 | 58,496,877 | 5.11 | 139,971,152 | 12.23 |
