Table 2 Guide to data files deposited in PRIDE Database.
From: Interactome dynamics of RAF1-BRAF kinase monomers and dimers
Raw Data Files: | ||||||
|---|---|---|---|---|---|---|
Construct(s) | Drug | A/C | Biological Replicate 1 | Biological Replicate 2 | Biological Replicate 3 | |
a) Data used in the publication | ||||||
pcDNA3.1 | − | + | 29AprCR_Nora1.raw | 29AprCR_Nora25.raw | 29AprCR_Nora49.raw | |
29AprCR_Nora1_1_130430110103.raw | 29AprCR_Nora25_1.raw | 29AprCR_Nora49_1.raw | ||||
pFKBP | pFRB | − | + | 29AprCR_Nora2.raw | 29AprCR_Nora26.raw | 29AprCR_Nora50.raw |
29AprCR_Nora2_1_130430142009.raw | 29AprCR_Nora26_1.raw | 29AprCR_Nora50_1.raw | ||||
pFKBP | pFRB | SOR | + | 29AprCR_Nora3_1.raw | 29AprCR_Nora27.raw | 29AprCR_Nora51.raw |
29AprCR_Nora3_130430160530.raw | 29AprCR_Nora27_1.raw | 29AprCR_Nora51_1.raw | ||||
pFKBP | pFRB | VEM | + | 29AprCR_Nora4.raw | 29AprCR_Nora28.raw | 29AprCR_Nora52.raw |
29AprCR_Nora4_1.raw | 29AprCR_Nora28_1.raw | 29AprCR_Nora52_1.raw | ||||
BRAF(wt) | RAF1 | − | − | 29AprCR_Nora5.raw | 29AprCR_Nora29.raw | 29AprCR_Nora53.raw |
29AprCR_Nora5_1.raw | 29AprCR_Nora29_1.raw | 29AprCR_Nora53_1.raw | ||||
BRAF(wt) | RAF1 | − | + | 29AprCR_Nora6.raw | 29AprCR_Nora30.raw | 29AprCR_Nora54.raw |
29AprCR_Nora6_1.raw | 29AprCR_Nora30_1.raw | 29AprCR_Nora54_1.raw | ||||
BRAF(wt) | RAF1 | SOR | − | 29AprCR_Nora7.raw | 29AprCR_Nora31.raw | 29AprCR_Nora55.raw |
29AprCR_Nora7_1.raw | 29AprCR_Nora31_1.raw | 29AprCR_Nora55_1.raw | ||||
BRAF(wt) | RAF1 | SOR | + | 29AprCR_Nora8.raw | 29AprCR_Nora32.raw | 29AprCR_Nora56.raw |
29AprCR_Nora8_1.raw | 29AprCR_Nora32_1.raw | 29AprCR_Nora56_1.raw | ||||
BRAF(wt) | RAF1 | VEM | − | 29AprCR_Nora9.raw | 29AprCR_Nora33.raw | 29AprCR_Nora57.raw |
29AprCR_Nora9_1.raw | 29AprCR_Nora33_1.raw | 29AprCR_Nora57_1.raw | ||||
BRAF(wt) | RAF1 | VEM | + | 29AprCR_Nora10.raw | 29AprCR_Nora34.raw | 29AprCR_Nora58.raw |
29AprCR_Nora10_1.raw | 29AprCR_Nora34_1.raw | 29AprCR_Nora58_1.raw | ||||
BRAF(V600E) | RAF1 | − | − | 29AprCR_Nora11.raw | 29AprCR_Nora35.raw | 29AprCR_Nora59.raw |
29AprCR_Nora11_1.raw | 29AprCR_Nora35_1.raw | 29AprCR_Nora59_1.raw | ||||
BRAF(V600E) | RAF1 | − | + | 29AprCR_Nora12.raw | 29AprCR_Nora36.raw | 29AprCR_Nora60.raw |
29AprCR_Nora12_1.raw | 29AprCR_Nora36_1.raw | 29AprCR_Nora60_1.raw | ||||
BRAF(V600E) | RAF1 | SOR | − | 29AprCR_Nora13.raw | 29AprCR_Nora37.raw | 29AprCR_Nora61.raw |
29AprCR_Nora13_1.raw | 29AprCR_Nora37_1.raw | 29AprCR_Nora61_1.raw | ||||
BRAF(V600E) | RAF1 | SOR | + | 29AprCR_Nora14.raw | 29AprCR_Nora38.raw | 29AprCR_Nora62.raw |
29AprCR_Nora14_1.raw | 29AprCR_Nora38_1.raw | 29AprCR_Nora62_1.raw | ||||
BRAF(V600E) | RAF1 | VEM | − | 29AprCR_Nora15.raw | 29AprCR_Nora39.raw | 29AprCR_Nora63.raw |
29AprCR_Nora15_1.raw | 29AprCR_Nora39_1.raw | 29AprCR_Nora63_1.raw | ||||
BRAF(V600E) | RAF1 | VEM | + | 29AprCR_Nora16.raw | 29AprCR_Nora40.raw | 29AprCR_Nora64.raw |
29AprCR_Nora16_1.raw | 29AprCR_Nora40_1.raw | 29AprCR_Nora64_1.raw | ||||
b) Data not used in the publication | ||||||
BRAF(D594G) | RAF1 | − | − | 29AprCR_Nora17.raw | 29AprCR_Nora41.raw | 29AprCR_Nora65.raw |
29AprCR_Nora17_1.raw | 29AprCR_Nora41_1.raw | 29AprCR_Nora65_1.raw | ||||
BRAF(D594G) | RAF1 | − | + | 29AprCR_Nora18.raw | 29AprCR_Nora42.raw | 29AprCR_Nora66.raw |
29AprCR_Nora18_1.raw | 29AprCR_Nora42_1.raw | 29AprCR_Nora66_1.raw | ||||
KSR1 | RAF1 | − | − | 29AprCR_Nora19.raw | 29AprCR_Nora43.raw | 29AprCR_Nora67.raw |
29AprCR_Nora19_1.raw | 29AprCR_Nora43_1.raw | 29AprCR_Nora67_1.raw | ||||
KSR1 | RAF1 | − | + | 29AprCR_Nora20.raw | 29AprCR_Nora44.raw | 29AprCR_Nora68.raw |
29AprCR_Nora20_1.raw | 29AprCR_Nora44_1.raw | 29AprCR_Nora68_1.raw | ||||
KSR1 | RAF1 | SOR | − | 29AprCR_Nora21.raw | 29AprCR_Nora45.raw | 29AprCR_Nora69.raw |
29AprCR_Nora21_1.raw | 29AprCR_Nora45_1.raw | 29AprCR_Nora69_1.raw | ||||
KSR1 | RAF1 | SOR | + | 29AprCR_Nora22.raw | 29AprCR_Nora46.raw | 29AprCR_Nora70.raw |
29AprCR_Nora22_1.raw | 29AprCR_Nora46_1.raw | 29AprCR_Nora70_1.raw | ||||
KSR1 | RAF1 | VEM | − | 29AprCR_Nora23.raw | 29AprCR_Nora47.raw | 29AprCR_Nora71.raw |
29AprCR_Nora23_1.raw | 29AprCR_Nora47_1.raw | 29AprCR_Nora71_1.raw | ||||
KSR1 | RAF1 | VEM | + | 29AprCR_Nora24.raw | 29AprCR_Nora48.raw | 29AprCR_Nora72.raw |
29AprCR_Nora24_1.raw | 29AprCR_Nora48_1.raw | 29AprCR_Nora72_1.raw | ||||
c) Processed Data: MaxQuant (Version 1.3.0.5) Output Files | ||||||
mqpar.xml | ||||||
summary.txt | ||||||
experimentalDesignTemplate.txt | ||||||
peptides.txt | ||||||
checksum.txt | ||||||
parameters.txt | ||||||
proteingroups.txt | ||||||
modificationSpecificPeptides.txt | ||||||
