Table 3 Statistics of repetitive elements in the Microplitis manilae genome.
From: Chromosome-level genome assembly of Microplitis manilae Ashmead, 1904 (Hymenoptera: Braconidae)
Repeat type | Count | Length occupied (bp) | Proportion in genome | Repeat type | Count | Length occupied (bp) | Proportion in genome |
|---|---|---|---|---|---|---|---|
DNA | 266 | 73,824 | 0.03% | SINE | 2 | 149 | 0.00% |
Academ-1 | 1 | 56 | 0.00% | LINE | 163 | 15,950 | 0.01% |
CMC-Chapaev-3 | 141 | 75,850 | 0.03% | CR1 | 543 | 261,360 | 0.09% |
CMC-EnSpm | 4,635 | 781,206 | 0.28% | Dong-R4 | 1,202 | 2,198,887 | 0.78% |
Crypton-I | 377 | 107,590 | 0.04% | I | 142 | 157,464 | 0.06% |
DTA | 13,316 | 2,972,711 | 1.05% | I-Jockey | 224 | 199,628 | 0.07% |
DTC | 27,206 | 5,160,763 | 1.82% | L1 | 1 | 88 | 0.00% |
DTH | 3,868 | 452,752 | 0.16% | L2 | 1,484 | 922,420 | 0.33% |
DTM | 45,353 | 7,551,843 | 2.67% | Penelope | 156 | 61,258 | 0.02% |
DTT | 3,317 | 429,965 | 0.15% | R1 | 669 | 562,557 | 0.20% |
Helitron | 26,052 | 3,328,536 | 1.18% | R1-LOA | 53 | 99,066 | 0.04% |
MULE-MuDR | 276 | 148,977 | 0.05% | R2 | 12 | 2,043 | 0.00% |
MULE-NOF | 1,055 | 160,661 | 0.06% | R2-NeSL | 41 | 37,086 | 0.01% |
Maverick | 2,851 | 4,566,223 | 1.61% | RTE | 34 | 16,849 | 0.01% |
Merlin | 341 | 85,753 | 0.03% | RTE-BovB | 24 | 1,455 | 0.00% |
PIF-Harbinger | 74 | 11,658 | 0.00% | RTE-RTE | 2 | 22 | 0.00% |
PIF-Spy | 104 | 66,603 | 0.02% | RTE-X | 289 | 423,984 | 0.15% |
PiggyBac | 281 | 88,378 | 0.03% | LTR | 193 | 87,371 | 0.03% |
Sola-2 | 613 | 200,965 | 0.07% | Copia | 10,485 | 2,707,342 | 0.96% |
TcMar-Fot1 | 707 | 178,595 | 0.06% | DIRS | 261 | 272,871 | 0.10% |
TcMar-Mariner | 27,955 | 10,056,986 | 3.56% | Gypsy | 27,718 | 20,858,254 | 7.37% |
TcMar-Pogo | 17 | 3,525 | 0.00% | Ngaro | 300 | 45,966 | 0.02% |
TcMar-Tc1 | 71 | 15,323 | 0.01% | Pao | 1,442 | 1,351,002 | 0.48% |
TcMar-Tc4 | 55 | 31,151 | 0.01% | unknown | 21,517 | 4,187,732 | 1.48% |
TcMar-Tigger | 7 | 499 | 0.00% | MITE | |||
TcMar-m44 | 35 | 29,907 | 0.01% | DTA | 444 | 49,790 | 0.02% |
Zator | 2,950 | 1,102,391 | 0.39% | DTC | 6,556 | 724,928 | 0.26% |
hAT | 100 | 47,405 | 0.02% | DTH | 381 | 38,784 | 0.01% |
hAT-Ac | 471 | 229,325 | 0.08% | DTM | 7,860 | 687,854 | 0.24% |
hAT-Blackjack | 74 | 85,113 | 0.03% | DTT | 178 | 16,007 | 0.01% |
hAT-Tag1 | 5 | 378 | 0.00% | RC | |||
hAT-Tip100 | 1 | 125 | 0.00% | Helitron | 5,147 | 1,690,418 | 0.60% |
hAT-hAT19 | 602 | 129,486 | 0.05% | Satellite | 1,728 | 292,656 | 0.10% |
hAT-hAT5 | 1 | 44 | 0.00% | Simple_repeat | 309 | 28,979 | 0.01% |
hAT-hATm | 206 | 115,356 | 0.04% | Unknown | 271,211 | 76,081,305 | 26.90% |
Total | 524,155 | 152,371,448 | 53.87% |
