Table 3 Technical characteristics of the datasets included in the meta-analysis.
Ref. | GEO accession number | Technical characteristics | |||
|---|---|---|---|---|---|
Single cell/nucleus platform | Sequencer | Data pre-processing | |||
sn | Wilson PC, et al. | GSE131882 | 10X Chromium | Illumina NovaSeq 6000 | zUMIs v2.0 |
Wu H, et al. | GSE118184 | 10X Chromium | Illumina HiSeq 2500 | zUMIs v1 | |
Wu H, et al. | GSE114156 | inDrop | Illumina HiSeq 2500, NextSeq | dropTag, dropEst | |
Muto Y, et al. | GSE151302 | 10X Chromium | Illumina NovaSeq 6000 | CellRanger v3.1.0 | |
sc | Liao J, et al. | GSE131685 | 10X Chromium | Illumina Hiseq Xten | CellRanger v3.0 |
Zhang Y, et al. | GSE159115 | 10X Chromium | Illumina HiSeq 2500 | CellRanger v2.1.1 | |
Menon R, et al. | GSE140989 | 10X Chromium | Illumina HiSeq 4000 | CellRanger | |
