Table 4 List of broad cell type marker genes used to allocate cell types to clusters.

From: Meta-analysis of single-cell and single-nucleus transcriptomics reveals kidney cell type consensus signatures

A. scRNA-seq markers
Cell type			Markers
Immune	Macro.	Macrophage	CD68^37,45,46	S100A8⁴⁶	S100A9⁴⁶	FCN1⁵²	LILRA5⁴⁶
	DC	Dendritic cells	CD68⁴⁶	FCER1A⁴⁵	CLEC10A⁴⁶
	B.cells	B cells	CD79A^37,45,46	MS4A1^45,46
	CD4.T.cells	CD4 T cells	CD3D^45,46	IL7R^45,46
	CD8.T.cells	CD8 T cells	CD3D^45,46	NKG7⁴⁶	GZMA^37,47	GNLY⁴⁸
	NK.cells	Natural killer cells	NKG7⁴⁶	GZMA⁴⁷	GNLY⁴⁸
Vascular	EC.vei	Endothelial cells, veinous	EMCN^9,22,37	ENG^22,37,38	PLAT²²	PLVAP^22,37
	EC.glom	Endothelial cells, glomerular	EMCN^9,22,37	ENG^22,37,38	PLAT²²	EHD3³⁸
	EC.art	Endothelial cells, arterial	EMCN^9,22,37	ENG^22,37	CAV1³⁸
	vSMC	Vascular smooth muscle cells	ACTA2^9,41	TAGLN³⁷	CAV1⁴²	PDGFRB³⁹
	Fibro.	Fibroblasts	PLK2⁵⁰	PLK3⁵¹
Nephron epithelail cells	Podo.	Podocytes	NPHS2^6,9,22,37	PODXL^6,22,37	CTGF²²	CTGF²²
	PEC	Parietal epithelial cells	CRYAB²²	CFH²²	CTGF²²	VCAM1²²
	PTC	Proximal tubule cells	CRYAB²²	MIOX²²	ALDOB²²	APOE²²
	LoH.DTL	Descending thin limb of the loop of Henle cells	CRYAB^6,9	VCAM1⁹	CLDN4⁴⁹
	LoH.ATL	Ascending thin limb of the loop of Henle cells	CLDN10^9,49	SLC12A1²²	CLDN4⁴⁹
	LoH.TAL	Thick ascending limb of the loop of Henle cells	SLC12A1^6,9,22,37	UMOD^6,9,22,37	KNG1^6,9,22	CLDN10⁵⁴
	DCT	Distal contourned tubule cells	SLC12A3^6,9,37	CALB1^9,22	KNG1²²
	CNT	Connecting tubule cells	CALB1^6,9,22,37	SLC8A1^6,9,22	KNG1²²
	PC.CNT	Principal cells, connecting tubule	CALB1^6,22	AQP2^6,22	AQP3^6,22	FXYD4⁶
	PC.CD	Principal cells, collecting duct	AQP2^6,9,22,37	AQP3^6,9,22,37	FXYD4^6,9,22,37
	IC.A	Intercalated cells, A-type	SLC4A1^6,9,22,37	FOXI1^6,9,22	DMRT2^9,22	ATP6V1G3²²	APOE⁵³
	IC.B	Intercalated cells, B-type	SLC26A4^9,22,37	INSRR^22,37	ATP6V1G3²²	FOXI1²²
B. snRNA-seq markers
Vascular	EC.vei	Endothelial cells, veinous	EMCN^9,22,37	ENG^22,37,38	PLVAP^22,37
	EC.glom	Endothelial cells, glomerular	EMCN^9,22,37	ENG^22,37,38	KDR^22,37,38	EHD3³⁸	CD34³⁷	ITGA8²²
	EC.art	Endothelial cells, arterial	EMCN^9,22,37	ENG^22,37,38	CD34^22,38	VEGFC⁴⁴
	vSMC	Vascular smooth muscle cells	ACTA2^9,41	PDGFRB³⁹	ITGA8⁴³
	Mes.	Mesangial cells	PDGFRB^9,39	ITGA8^9,22,40	EMCN²²	ENG²²	COL12A1²²
	Fibro.	Fibroblasts	COL12A1²²	COL6A2²²
Nephron epithelail cells	Podo.	Podocytes	NPHS2^6,9,22,37	WT1^6,22,37
	PEC	Parietal epithelial cells	CTGF²²	CFH²²	WT1²²	CRYAB²²
	PTC	Proximal tubule cells	MIOX^6,22^,99	GPX3^6,9	CUBN^6,9	ALDOB²²
	LoH.DTL	Descending thin limb of the loop of Henle cells	CRYAB^6,9	VCAM1⁹	CLDN4⁴⁹	CUBN⁵⁴
	LoH.ATL	Ascending thin limb of the loop of Henle cells	SLC12A1²²	CLDN4⁴⁹	UMOD⁵⁴
	LoH.TAL	Thick ascending limb of the loop of Henle cells	SLC12A1^6,9,22,37	UMOD^6,9,22,37	KNG1^6,9,22
	DCT	Distal contourned tubule cells	SLC12A3^6,9,37	KNG1²²
	CNT	Connecting tubule cells	CALB1^6,9,22,37	SLC8A1^6,9,22	KNG1
	PC.CNT	Principal cells, connecting tubule	AQP2²²	SLC8A1²²	CALB1²²
	PC.CD	Principal cells, collecting duct	AQP2^6,9,22,37	AQP3^6,9,22,37	FXYD4^6,9,22,37
	IC.A	Intercalated cells, A-type	SLC4A1^6,9,22,37	FOXI1^6,9,22	DMRT2^9,22	ATP6V1G3²²
	IC.B	Intercalated cells, B-type	SLC26A4^9,22,37	INSRR^22,37	FOXI1²²	ATP6V1G3²²

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Table 4 List of broad cell type marker genes used to allocate cell types to clusters.

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