Table 2 E. coli strains genome assembly statistics.
Genome assembly statistics | E. coli IP9 | E. coli KKA | E. coli IPE |
|---|---|---|---|
# Number of reads after Trimmomatic run | 3,682,617 | 4,255,723 | 4,762,800 |
# Number of reads after Flash run | 2,182,721 (extended) 1,499,896 (remaining) | 2,251,378 (extended) 2,004,345 (remaining) | 2,913,564 (extended) 1,849,236 (remaining) |
# contigs generated | 124 | 76 | 137 |
Total length (bp) | 4,910,225 | 5,101,091 | 5,225,435 |
GC (%) | 50.84% | 50.55% | 50.64% |
Largest contig (bp) | 491,679 | 476,221 | 720,451 |
N50 (bp) | 137,460 | 283,877 | 295,668 |
