Table 5 Statistics of repetitive elements.
Class | Subclass | Number | Total length (bp) | % of genome |
|---|---|---|---|---|
SINEs: | 2083225 | 312596265 | 11.6 | |
MIRs | 399931 | 57592626 | 2.14 | |
LINEs: | 1318367 | 742600414 | 27.57 | |
LINE1 | 584926 | 340390426 | 12.64 | |
LINE2 | 255007 | 65643056 | 2.44 | |
L3/CR1 | 34731 | 7189988 | 0.27 | |
RTE | 442538 | 329203364 | 12.22 | |
LTR elements: | 415490 | 131192082 | 4.87 | |
ERVL | 75217 | 29646401 | 1.1 | |
ERVL-MaLRs | 121580 | 39874562 | 1.48 | |
ERV_classI | 84207 | 37072606 | 1.38 | |
ERV_classII | 117558 | 20606823 | 0.76 | |
DNA elements: | 289836 | 57547635 | 2.14 | |
hAT-Charlie | 163969 | 30537889 | 1.13 | |
TcMar-Tigger | 45005 | 11907379 | 0.44 | |
Unclassified: | 3023 | 464793 | 0.02 | |
Total interspersed repeats: | 1244401189 | 46.19 | ||
Small RNA: | 254380 | 43115368 | 1.6 | |
Satellites: | 6216 | 39399744 | 1.46 | |
Simple repeats: | 537045 | 22458650 | 0.83 | |
Low complexity: | 81860 | 4022678 | 0.15 | |
Total bases masked: | 1311158349 | 48.67 | ||
