Table 3 Summary of annotated transposable elements of the blackfin icefish.
From: A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus
Class | Count | Length occupied (bp) | Percentage of sequences |
|---|---|---|---|
SINEs | 29,839 | 4,538,018 | 0.43 |
LINEs | 184,444 | 82,365,499 | 7.73 |
LTR elements | 459,278 | 180,267,424 | 16.92 |
DNA elements | 565,316 | 167,745,457 | 15.74 |
Unclassified | 470,871 | 103,632,464 | 9.72 |
Small RNA | 7,705 | 1,934,905 | 0.18 |
Satellites | 9,349 | 1,838,578 | 0.17 |
Simple repeats | 294,617 | 23,376,738 | 2.19 |
Low complexity | 24,186 | 1,458,893 | 0.14 |
Total | 563,522,826 | 52.88 |
