Table 3 Summary of Gorsachius magnificus genome assembly and annotation.
Genomic Resource | value |
|---|---|
Draft genome assembly | |
Total Size (bp) | 1,176,285,410 |
No. of contig | 539 |
Mean length (bp) | 2,182,347 |
N50 (bp)/rank | 18,463,888/19 |
N90 (bp)/rank | 4,115,765/65 |
Max contig size (bp) | 62,038,978 |
Min contig size (bp) | 2099 |
Chromosome-length assembly | |
Total Size (bp) | 1,176,607,910 |
No. of scaffold | 79 |
Mean length (bp) | 14,893,771 |
N50 (bp) /rank | 84,772,300/3 |
N90 (bp) /rank | 21,490,085/13 |
Max scaffold size (bp) | 218,435,882 |
Min scaffold size (bp) | 2,099 |
BUSCO completeness | Complete:96.6% [S:95.9%, D:0.4%], Fragmented:0.7%, Missing:2.7% |
Genome characteristics | |
GC content | 42.88% |
No. of predicted protein-coding gene | 18062 |
No. of transcripts with some UTR annotation | 17676 (97%) |
Average transcript length (Kb) | 22.8 |
Average CDS length (Kb) | 1.6 |
Average exon length (bp) | 166.3 |
Average number of exon | 9.7 |
Repetitive sequences (% of genome) | |
SINEs (Mb) | 1.3 (0.11%) |
LINEs (Mb) | 29.4 (2.5%) |
LTR (Mb) | 64.1(5.45%) |
Total (Mb) | 122.4 (10.41%) |
Genome annotation | |
No. of functionally annotated protein-coding gene | 17177 (95%) |
No. of genes with GO annotation | 14600 (80%) |
No. of genes with KEGG annotation | 12754 (71%) |
BUSCO completeness | Complete:97.2% [S:83.9%, D:13.3%], Fragmented:0.9%, Missing:1.9% |
