Table 1 Genome assembly and annotation statistics.
Contigs | Scaffolds | Final genome | |
|---|---|---|---|
No. of sequences | 750 | 728 | 721 |
Genome size (Mb) | ~784 | ~784 | ~779 |
Number of Pseudochromosomes | 11 | 11 | |
G + C % | ~33.6 | ~33.6 | ~33.6 |
N % | 0 | 0.00029 | 0.00018 |
Max length (Mb) | ~56.6 | ~97.8 | ~97.2 |
N50 length (bp) | 20287965 | 43484440 | 43002243 |
*BUSCO (n: 1367) | C:99.4% [S:99.0%, D:0.4%] F:0.2% M:0.4% | C:99.5% [S:99.1%, D:0.4%] F:0.1% M:0.4% | C:99.5% [S:99.1%, D:0.4%] F:0.1% M:0.4% |
Protein coding genes | 29666 | ||
Total mRNAs | 32652 | ||
Total exons | 149788 | ||
Total introns | 117160 | ||
NR annotation | 29747 (~91.1%) | ||
UniProt annotation | 29755 (~91.1%) | ||
SwissProt annotation | 14823 (~45.3%) | ||
InterPro annotation | 18302 (~56.0%) | ||
KEGG annotation | 9930 (~30. 4%) |
