Table 4 Statistics of the BUSCO genome, transcripts, and proteins completeness evaluation using the solanales_odb10 lineage dataset for Nicotiana sylvestris, Nicotiana tomentosiformis and Nicotiana tabacum.
counts | percent | |||||
|---|---|---|---|---|---|---|
Genome | Transcripts | Proteins | Genome | Transcripts | Proteins | |
N. sylvestris | ||||||
Complete BUSCOs (C) | 5847 | 5657 | 5519 | 98.3% | 95.1% | 92.8% |
Complete and single-copy BUSCOs (S) | 5605 | 5434 | 5298 | 94.2% | 91.3% | 89.0% |
Complete and duplicated BUSCOs (D) | 242 | 223 | 221 | 4.1% | 3.7% | 3.7% |
Fragmented BUSCOs (F) | 8 | 97 | 144 | 0.1% | 1.6% | 2.4% |
Missing BUSCOs (M) | 95 | 196 | 287 | 1.6% | 3.3% | 4.8% |
Total BUSCO groups searched | 5950 | 5950 | 5950 | 100.0% | 100.0% | 100.0% |
N. tomentosiformis | ||||||
Complete BUSCOs (C) | 5858 | 5716 | 5560 | 98.5% | 96.1% | 93.4% |
Complete and single-copy BUSCOs (S) | 5660 | 5517 | 5351 | 95.1% | 92.7% | 89.9% |
Complete and duplicated BUSCOs (D) | 198 | 199 | 209 | 3.3% | 3.3% | 3.5% |
Fragmented BUSCOs (F) | 12 | 79 | 140 | 0.2% | 1.3% | 2.4% |
Missing BUSCOs (M) | 80 | 155 | 250 | 1.3% | 2.6% | 4.2% |
Total BUSCO groups searched | 5950 | 5950 | 5950 | 100.0% | 100.0% | 100.0% |
N. tabacum | ||||||
Complete BUSCOs (C) | 5901 | 5837 | 5774 | 99.2% | 98.1% | 97.0% |
Complete and single-copy BUSCOs (S) | 525 | 835 | 996 | 8.8% | 14.0% | 16.7% |
Complete and duplicated BUSCOs (D) | 5376 | 5002 | 4778 | 90.4% | 84.1% | 80.3% |
Fragmented BUSCOs (F) | 1 | 38 | 66 | 0.0% | 0.6% | 1.1% |
Missing BUSCOs (M) | 48 | 75 | 110 | 0.8% | 1.3% | 1.8% |
Total BUSCO groups searched | 5950 | 5950 | 5950 | 100.0% | 100.0% | 100.0% |
