Table 1 Contiguity assessment of the Spiraea crenata assemblies created based on QUAST31 statistics during the process of genome assembly.
From: The draft genome of Spiraea crenata L. (Rosaceae) – the first complete genome in tribe Spiraeeae
Assembly Feature | nextDenovo | MaSuRCA | Merged (MaSuRCA + nextDenovo) | Merged pseudohaploid | Merged and reduced |
|---|---|---|---|---|---|
# contigs (> = 0 bp) | 115 | 139 | 94 | 93 | 89 |
# contigs (> = 1k bp) | 115 | 139 | 94 | 93 | 89 |
# contigs (> = 5k bp) | 115 | 139 | 94 | 93 | 89 |
# contigs (> = 10k bp) | 115 | 138 | 94 | 93 | 89 |
# contigs (> = 25k bp) | 115 | 138 | 94 | 93 | 89 |
# contigs (> = 50k bp) | 113 | 137 | 93 | 92 | 88 |
Total length (> = 0 bp) | 212,791,066 | 202,127,248 | 218,618,502 | 218,457,710 | 217,666,113 |
Total length (> = 1k bp) | 212,791,066 | 202,127,248 | 218,618,502 | 218,457,710 | 217,666,113 |
Total length (> = 5k bp) | 212,791,066 | 202,127,248 | 218,618,502 | 218,457,710 | 217,666,113 |
Total length (> = 10k bp) | 212,791,066 | 202,122,159 | 218,618,502 | 218,457,710 | 217,666,113 |
Total length (> = 25k bp) | 212,791,066 | 202,122,159 | 218,618,502 | 218,457,710 | 217,666,113 |
Total length (> = 50k bp) | 212,711,542 | 202,094,899 | 218,574,431 | 218,413,639 | 217,622,567 |
# contigs | 115 | 139 | 94 | 93 | 89 |
Largest contig | 14,311,357 | 15,493,676 | 14,302,248 | 14,302,248 | 14,289,189 |
Total length | 212,791,066 | 202,127,248 | 218,618,502 | 218,457,710 | 217,666,113 |
GC (%) | 39.28 | 39.22 | 39.24 | 39.23 | 39.21 |
N50 | 5,658,611 | 2,226,269 | 7,704,760 | 7,704,760 | 7,686,064 |
N90 | 1,216,363 | 709,943 | 1,503,707 | 1,503,707 | 1,599,821 |
auN | 6,274,732.6 | 4,243,811.9 | 7,681,326.7 | 7,686,862.1 | 7,704,330.3 |
L50 | 12 | 19 | 11 | 11 | 11 |
L90 | 42 | 78 | 32 | 32 | 31 |
# N’s per 100 kbp | 0 | 14.54 | 0.51 | 0.51 | 0.46 |
