Table 3 Publicly available genome sequences used for the assessment of gene orthology and completeness of the final Spiraea crenata assembly.
From: The draft genome of Spiraea crenata L. (Rosaceae) – the first complete genome in tribe Spiraeeae
Species | NCBI Assembly accession number | Subfamily | Tribe | Genome size (Mbp) | Number of genes as available in NCBI Genome database |
|---|---|---|---|---|---|
Rosa chinensis | GCF_002994745.257 | Rosoideae | Roseae | 515.119 | 48,188 |
Potentilla anserina | GCF_933775445.158 | Rosoideae | Potentilleae | 236.974 | 25,318 |
Fragaria vesca subsp. vesca | GCF_000184155.159 | Rosoideae | Potentilleae | 214.373 | 23,319 |
Malus baccata | GCA_006547085.160 | Amygdaloideae | Maleae | 674.412 | 45,900 |
Malus sylvestris | GCF_916048215.261 | Amygdaloideae | Maleae | 641.527 | 59,561 |
Malus domestica | GCF_002114115.162 | Amygdaloideae | Maleae | 703.358 | 52,036 |
Malus domestica | GCA_004115385.163 | Amygdaloideae | Maleae | 660.463 | 42,841 |
Pyrus ussuriensis × Pyrus communis | GCA_008932095.164 | Amygdaloideae | Maleae | 510.637 | 43,120 |
Pyrus × bretschneideri | GCF_019419815.165 | Amygdaloideae | Maleae | 509.113 | 51,345 |
Prunus avium | GCF_002207925.166 | Amygdaloideae | Amygdaleae | 272.362 | 35,009 |
Prunus yedoensis var. nudiflora | GCA_002966975.267 | Amygdaloideae | Amygdaleae | 319.21 | 41,294 |
Prunus persica | GCF_000346465.268 | Amygdaloideae | Amygdaleae | 227.569 | 32,595 |
Prunus dulcis | GCF_902201215.169 | Amygdaloideae | Amygdaleae | 227.757 | 33,326 |
Prunus dulcis | GCA_021292205.270 | Amygdaloideae | Amygdaleae | 257.659 | 45,581 |
Prunus dulcis | GCA_008632915.271 | Amygdaloideae | Amygdaleae | 246.117 | 21,564 |
Prunus armeniaca | GCA_020424065.172 | Amygdaloideae | Amygdaleae | 251.33 | 29,211 |
Prunus armeniaca | GCA_903112645.173 | Amygdaloideae | Amygdaleae | 215.952 | 30,573 |
Prunus armeniaca | GCA_903114435.174 | Amygdaloideae | Amygdaleae | 215.24 | 30,315 |
Prunus mume | GCF_000346735.175 | Amygdaloideae | Amygdaleae | 234.03 | 29,705 |
