Fig. 3
From: An open source knowledge graph ecosystem for the life sciences
The PheKnowLator Ecosystem. This figure provides an overview of the PheKnowLator ecosystem106. The ecosystem consists of three components as indicated by the gray boxes: (1) Knowledge Graph Construction Resources, which consist of resources to download and process data and an algorithm to customize the construction of large-scale heterogeneous biomedical knowledge graphs; (2) Knowledge Graph Benchmarks, which consist of prebuilt KGs that can be used to systematically assess the effects of different knowledge representations on downstream analyses, workflows, and learning algorithms; and (3) Knowledge Graph Tools to use knowledge graphs, cloud-based data storage, APIs, and triplestores. Acronyms: NT (N-Triples file format); OWL (Web Ontology Language); PKL (Python pickle file format); SPARQL (SPARQL Protocol and RDF Query Language).
