Table 2 Statistics of repeat sequences in Ficus hirta genome.
From: A high-quality chromosome-level genome assembly of Ficus hirta
Type | number of elements | length occupied of sequence (bp) | Percentage (%) |
|---|---|---|---|
Class I: Retroelements | 67,885 | 60,768,272 | 20.44 |
SINEs | 82 | 10,262 | 0.00 |
LINEs | 3,959 | 1,442,540 | 0.49 |
L2/CR1/Rex | 720 | 272,805 | 0.09 |
R2/R4/NeSL | 149 | 28,863 | 0.01 |
RTE/Bov-B | 660 | 266,005 | 0.09 |
L1/CIN4 | 2,430 | 874,867 | 0.29 |
LTR elements | 63,844 | 59,315,470 | 19.95 |
Ty1/Copia | 24,901 | 13,596,523 | 4.57 |
Gypsy/DIRS1 | 32,826 | 41,608,009 | 14.00 |
Class II: DNA transposons | 26,491 | 11,586,496 | 3.90 |
hobo-Activator | 6,858 | 2,129,275 | 0.72 |
Tc1-IS630-Pogo | 101 | 27,592 | 0.01 |
Tourist/Harbinger | 3,813 | 1,251,457 | 0.42 |
Rolling-circles | 1,722 | 1,811,588 | 0.61 |
Unclassified | 206,166 | 46,130,154 | 15.52 |
Small RNA | 5,523 | 1,584,467 | 0.53 |
Satellites | 482 | 218,225 | 0.07 |
Simple repeats | 246,733 | 8,768,605 | 2.95 |
Low complexity | 37,986 | 1,935,042 | 0.65 |
Total | — | 132,792,587 | 44.67 |
