Table 4 Characterization of allelic profiles of genes encoding the biosynthesis of internalins identified in the genomes of the Lm strain AUF and the Lm reference strains isolated from animals with listeriosis using BIGSdb-Lm database (https://bigsdb.pasteur.fr/listeria/).

From: Complete genome of the Listeria monocytogenes strain AUF, used as a live listeriosis veterinary vaccine

The Lm Strain

Allele

inlA

inlB

inlC

inlC2

inlD

inlE

inlF

inlG

inlH

inlI

inlJ

inlK

inlL

inlP

AUF

2

2

2

1

1

2

2

1

2

21

2

2

1

7

EGD

2

2

—

1

1

2

2

1

2

21

2

2

1

7

10403S

2

23

2

1

1

2

2

1

2

21

2

2

1

7

EGD-e

1

1

1

3

—

1

1

1

1

1

1

1

2

1

FDAARGOS_607

3

4

8

2

3

5

6

—

4

182

168

35

—

4

FSL-J1-158

—

369

18

—

—

—

—

—

—

78* (3752 SNP), P**

—

23* (20 SNP)

—

—

NTSN

3

4

6

2

3

5

6

—

4

4

168

5

—

—

UKVDL9

992* (24 SNP)

719* (16 SNP)

292* (2 SNP)

—

248* (2 SNP)

226

—

—

346* (2 SNP)

365* (85 SNP)

405* (6 SNP)

78* (14 SNP)

—

5578 (3 SNP)

UKVDL4

917

700

122

236* (12 SNP)

—

255 (19 SNP)

391* (19 SNP)

—

290* (12 SNP)

363

377

78* (1 SNP)

—

95

4/52—1953

30

27

—

—

—

—

—

—

—

135* (3745 SNP) псевдо**

—

24

—

—

UKVDL7

339

435* (17 SNP)***

—

244* (18 SNP)

—

267* (8 SNP)

—

—

298* (18 SNP)

400* (61 SNP)

466* (32 SNP)

78* (213 SNP)***

—

158* (4 SNP)

  1. The numbers in the cells are the allele numbers relevant for each of the Lm strain. The numbers in the brackets are the numbers of SNPs in the nucleotide sequence of the individual gene of the relevant Lm strain. *the closest match profile in the BIGSdb-Lm database (https://bigsdb.pasteur.fr/listeria/); **pseudogene, P; ***The last 3- 5 amino acids are truncated in the relevant sequence.
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