Table 5 Statistics of transposable elements for the Sinosolenaia oleivora genome.
From: Chromosome-level genome assembly of the freshwater mussel Sinosolenaia oleivora (Heude, 1877)
Type | Repbase TEs | TE proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | |
DNA | 129176254 | 6.18 | 22955138 | 1.1 | 210582215 | 10.07 | 328945510 | 15.74 |
LINE | 121046511 | 5.79 | 58493281 | 2.8 | 95488865 | 4.57 | 187023002 | 8.95 |
SINE | 42762259 | 2.05 | 0 | 0 | 53284731 | 2.55 | 60757406 | 2.91 |
LTR | 52128004 | 2.49 | 12439501 | 0.6 | 59136256 | 2.83 | 104027479 | 4.98 |
Satellite | 17082565 | 0.82 | 0 | 0 | 4940868 | 0.24 | 22003149 | 1.05 |
Simple_repeat | 0 | 0 | 0 | 0 | 123320 | 0.01 | 123320 | 0.01 |
Other | 106509 | 0.01 | 0 | 0 | 0 | 0 | 106509 | 0.01 |
Unknown | 1938596 | 0.09 | 0 | 0 | 358766530 | 17.16 | 360311461 | 17.24 |
Total | 306757033 | 14.67 | 93857472 | 4.49 | 767880209 | 36.73 | 982159858 | 46.98 |
