Table 6 Statistics of gene predictions in the Sinosolenaia oleivora genome.
From: Chromosome-level genome assembly of the freshwater mussel Sinosolenaia oleivora (Heude, 1877)
Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|
denovo/Genscan | 51283 | 22222.53 | 1207.46 | 4.66 | 258.86 | 5734.67 |
denovo/AUGUSTUS | 30749 | 9638.8 | 935.93 | 3.73 | 250.97 | 3188.69 |
homo/Mytilus_galloprovincialis | 34448 | 15900.74 | 967.44 | 4.1 | 236.13 | 4821.79 |
homo/Mizuhopecten_yessoensis | 19645 | 25436.89 | 1186.5 | 5.79 | 204.99 | 5064.79 |
homo/Crassostrea_virginica | 20862 | 22987.67 | 1148.92 | 5.53 | 207.72 | 4819.84 |
homo/Crassostrea_gigas | 20984 | 23083.77 | 1167.03 | 5.58 | 209.01 | 4781.42 |
trans.orf/RNAseq | 7722 | 38428.06 | 1523.69 | 8.9 | 402.39 | 4411.12 |
BUSCO | 4982 | 37970.19 | 1995.86 | 13.23 | 150.88 | 2942.01 |
MAKER | 20330 | 32884.16 | 1474.92 | 7.37 | 282.29 | 4832.11 |
HiCESAP | 21971 | 29003.27 | 1497.02 | 7.56 | 291.70 | 4081.83 |
