Table 1 Statistics of the Euphorbia tirucalli genome assembly and annotation.
Genome assembly | |
|---|---|
Total length of assembly (Mb) | 745.62 |
Number of contigs | 123 |
Contig N50 (Mb) | 74.16 |
Pseudochromosome number | 10 |
Scaffold N50 (Mb) | 75.09 |
Number of gaps | 43 |
Anchor rate (%) | 99.73 |
Mapped Illumina reads (%) | 99.88 |
BUSCO (%) | 97.80 |
GC content (%) | 37.20 |
LAI | 19.05 |
QV | 67.58 |
K-mer completeness | 87.71 |
Genome annotation | |
Total length of repeats (Mb) | 569.43 |
Repeats percentage of assembly (%) | 76.37 |
Number of protein-coding genes | 28,840 |
Average gene length (bp) | 4,191.84 |
Average intron length (bp) | 684.30 |
Average exon length (bp) | 290.86 |
Functional annotation | |
SwissProt | 21,030 (72.92%) |
Nr | 26,252 (91.03%) |
InterPro | 23,340 (80.93%) |
Pfam | 21,186 (73.46%) |
eggNOG | 23,838 (82.66%) |
Total | 26,304 (91.21%) |
