Table 6 Summary statistics of genome annotations in the Prosopocoilus inquinatus genome.
Structure annotation | |
|---|---|
Number of protein-coding genes | 13,452 |
Number of predicted protein sequences | 17,233 |
Mean protein length (aa) | 590.70 |
Mean gene length (bp) | 17,401.80 |
Gene ratio (%) | 36.03 |
Number of exons per gene | 6.4 |
Mean exon length (bp) | 347.40 |
Exon ratio (%) | 4.62 |
Number of CDSs per gene | 6.10 |
Mean CDS length (bp) | 270.30 |
CDS ratio (%) | 3.44 |
Number of introns per gene | 5.30 |
Mean intron length (bp) | 3,063 |
Intron ratio (%) | 34.21 |
Function annotation | |
Number of genes matching Uniprot records | 12,719 |
Number of genes labeled as “Uncharacterized protein” | 197 |
Number of genes labeled as “unknown function” | 755 |
Number of genes with InterProScan annotations | 11,503 |
Number of genes with GO items from InterProScan annotations | 7,087 |
Number of genes with KEGG pathway items from InterProScan annotations | 0 |
Number of genes with eggNOG annotations | 12,434 |
Number of genes with GO items from eggNOG annotations | 8,981 |
Number of genes with Enzyme Codes (EC) from eggNOG annotations | 2,838 |
Number of genes with KEGG ko terms from eggNOG annotations | 8,004 |
Number of genes with KEGG pathway terms from eggNOG annotations | 4,924 |
Number of genes with COG Functional Categories from eggNOG annotations | 11,656 |
Number of genes with GO items (combining InterProScan and eggNOG results) | 10,254 |
