Table 1 Statistics of sequencing data used for R. nuchalis genome assembly in this study.
From: Chromosome-level genome assembly and annotation of the Rhabdophis nuchalis (Hubei keelback)
Library type | Tissue | Sequencing platform | Insert size | Raw data(Gb) | Clean data(Gb) | Sequence coverage(×) |
|---|---|---|---|---|---|---|
MGI short reads | liver | BGISEQ DNBSEQ-T7 | 350 bp | 108.82 | 101.02 | 38.95 |
HiFi long reads | liver | PacBio Revio system | 15 kb | — | 79.31 | 39.65 |
Hi-C reads | liver | BGISEQ DNBSEQ-T7 | 350 bp | 209.72 | 209.72 | 107.70 |
RNA-seq reads | heart | BGISEQ DNBSEQ-T7 | 350 bp | 8.19 | 8.17 | — |
spleen | BGISEQ DNBSEQ-T7 | 350 bp | 8.85 | 8.83 | — | |
lung | BGISEQ DNBSEQ-T7 | 350 bp | 7.69 | 7.69 | — | |
kidney | BGISEQ DNBSEQ-T7 | 350 bp | 6.50 | 6.48 | — | |
muscle | BGISEQ DNBSEQ-T7 | 350 bp | 9.02 | 8.99 | — | |
Total | BGISEQ DNBSEQ-T7 | 350 bp | 40.26 | 40.14 | — |
