Table 11 Statistical results of Non-coding RNA annotation of the R. nuchalis genome (categorized by the type of Non-coding RNA).
From: Chromosome-level genome assembly and annotation of the Rhabdophis nuchalis (Hubei keelback)
Type | Copy Number | Average Length(bp) | Total Length(bp) | Percentage of sequence(%) | |
|---|---|---|---|---|---|
rRNA | 18S | 155 | 1,826.57 | 283,118 | 0.0147 |
28S | 159 | 7,415.39 | 1,179,047 | 0.0613 | |
5.8S | 32 | 153.00 | 4,896 | 0.0003 | |
5S | 51 | 115.04 | 5,867 | 0.0003 | |
Total rRNA | 397 | 3,710.15 | 1,472,928 | 0.0766 | |
snRNA | snRNA | 182 | 112.68 | 20,507 | 0.0011 |
miRNA | 325 | 91.15 | 29,625 | 0.0015 | |
spliceosomal | 214 | 121.17 | 25,930 | 0.0013 | |
other | 260 | 275.49 | 71,627 | 0.0037 | |
Total snRNA | 981 | 150.55 | 147,689 | 0.0076 | |
Regulatory | cis-regulatory elements | 158 | 56.70 | 8,959 | 0.0005 |
tRNA | tRNA | 2,063 | 74.59 | 153,889 | 0.0080 |
Total ncRNA | 3,599 | 495.54 | 1,783,465 | 0.0927 | |
