Table 8 Statistical outcomes of gene structure annotation in the R. nuchalis genome, obtained through three different methods and subsequently integrated.
From: Chromosome-level genome assembly and annotation of the Rhabdophis nuchalis (Hubei keelback)
Gene set | Total number of genes | Average gene length(bp) | Average CDS length(bp) | Average exons number per gene | Average exon length(bp) | Average intron length(bp) | |
|---|---|---|---|---|---|---|---|
Homoloy | A. prasina | 35,334 | 44,295.33 | 1,521.72 | 8.18 | 186.12 | 5,960.74 |
C. septentrionalis | 60,657 | 56,612.43 | 1,322.57 | 6.26 | 211.19 | 10,506.24 | |
T. elegans | 36,441 | 41,623.04 | 1,597.33 | 7.8 | 204.88 | 5,889.34 | |
P. guttatus | 43,085 | 38,799.13 | 1,358.57 | 7.18 | 189.22 | 6,058.53 | |
T. baileyi | 45,274 | 32,720.66 | 1,302.72 | 6.7 | 194.47 | 5,513.07 | |
GeMoMa | 48,439 | 43,916.72 | 1,084.15 | 5.55 | 195.46 | 9,420.91 | |
Transcriptome | PASA | 18,203 | 41,140.24 | 4,163.72 | 11.2 | 371.8 | 3,625.61 |
De novo | Augustus | 20,575 | 35,948.78 | 1,681.39 | 9.84 | 170.79 | 3,874.27 |
Final | EVM | 22,057 | 34,853.45 | 1,617.01 | 9.12 | 177.32 | 4,093.52 |
