Table 6 The statistics of gene models of protein-coding genes annotated in Spinibarbus caldwelli.
From: Chromosome-level genome assembly and annotation of the Spinibarbus caldwelli
Type | Gene Set | Number | Average transcript length (bp) | Average CDS length (bp) | Average exons per gene | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 83,779 | 9,631.51 | 1,116.00 | 6.26 | 178.37 | 1,619.90 |
SNAP | 112,169 | 8,057.08 | 693.43 | 4.42 | 156.89 | 2,153.21 | |
Homolog | C. idellus | 42,301 | 16,351.23 | 1,767.75 | 10.05 | 175.9 | 1,611.43 |
D. rerio | 43,001 | 14,835.96 | 1,690.38 | 9.45 | 178.83 | 1,555.26 | |
C. carpio | 44,667 | 15,369.23 | 1,683.29 | 9.51 | 176.91 | 1,607.29 | |
RNA-seq | transcripts | 66,945 | 26,825.13 | 3,514.74 | 12.08 | 290.89 | 2,103.30 |
PASA | 43281 | 9553.2 | 972.75 | 5.39 | 180.34 | 1952.72 | |
EVM | 75,526 | 11,636.33 | 1,192.17 | 6.87 | 173.52 | 1,779.07 | |
Pasa-update | 75,228 | 11,816.74 | 1195.66 | 6.87 | 174.08 | 1,809.82 | |
Final set | 49,377 | 15,627.88 | 1,574.95 | 9.18 | 171.58 | 1,718.14 | |
