Table 5 Summary of RNAseq sequencing data of AM genome.
From: Chromosome-scale genome assembly of Astragalus membranaceus using PacBio and Hi-C technologies
Sample | Total CleanReads | Clean data | Clean Q20% (fq1;fq2) | GC_rate (%) | Uniquely mapped reads | Total MappingRatio | Uniquely MappingRatio | SRA accession |
|---|---|---|---|---|---|---|---|---|
leaf_1 | 42,134,094 | 6,320,114,100 | 95.71;94.67 | 44.04 | 28,298,792 | 71.76% | 67.16% | SRR27790544 |
leaf_2 | 42,618,542 | 6,392,781,300 | 95.65;94.67 | 43.83 | 31,733,374 | 79.87% | 74.46% | SRR27790543 |
leaf_3 | 42,362,198 | 6,354,329,700 | 95.68;94.83 | 43.19 | 33,032,872 | 83.56% | 77.98% | SRR27790542 |
root_1 | 42,365,348 | 6,354,802,200 | 95.62;94.51 | 42.61 | 36,156,538 | 91.68% | 85.34% | SRR27790541 |
root_2 | 42,176,852 | 6,326,527,800 | 95.61;94.73 | 42.59 | 35,176,690 | 90.26% | 83.40% | SRR27790540 |
root_3 | 42,326,320 | 6,348,948,000 | 95.15;94.31 | 42.89 | 34,986,928 | 88.98% | 82.66% | SRR27790539 |
stem_1 | 42,113,002 | 6,316,950,300 | 95.63;94.54 | 42.57 | 36,319,666 | 91.70% | 86.24% | SRR27790538 |
stem_2 | 42,255,416 | 6,338,312,400 | 95.66;94.71 | 42.57 | 35,921,772 | 90.41% | 85.01% | SRR27790547 |
stem_3 | 42,317,456 | 6,347,618,400 | 95.66;94.26 | 43.19 | 34,638,542 | 87.17% | 81.85% | SRR27790546 |
