Table 1 Numbers of differentially expressed genes identified in each pairwise comparison.

From: Transcriptomes of soybean roots and nodules inoculated with Sinorhizobium fredii with NopP and NopI variants

Pairwise comparison

Change in expression

Number of genes

R2_root_vs_UN_Root

down

425

R2_root_vs_UN_Root

up

652

R2i4_Nod_vs_R2_Nod

down

1005

R2i4_Nod_vs_R2_Nod

up

1381

R2i4_root_vs_R2_root

down

486

R2i4_root_vs_R2_root

up

597

R2i4_root_vs_UN_Root

down

87

R2i4_root_vs_UN_Root

up

179

R2p4_Nod_vs_R2_Nod

down

11

R2p4_Nod_vs_R2_Nod

up

21

R2p4_root_vs_R2_root

down

22

R2p4_root_vs_R2_root

up

49

R2p4_root_vs_UN_Root

down

157

R2p4_root_vs_UN_Root

up

541

R4_root_vs_UN_Root

down

282

R4_root_vs_UN_Root

up

869

R4i2_Nod_vs_R4_Nod

down

919

R4i2_Nod_vs_R4_Nod

up

1942

R4i2_root_vs_R4_root

down

614

R4i2_root_vs_R4_root

up

486

R4i2_root_vs_UN_Root

down

96

R4i2_root_vs_UN_Root

up

340

R4p2_Nod_vs_R4_Nod

down

1697

R4p2_Nod_vs_R4_Nod

up

628

R4p2_root_vs_R4_root

down

275

R4p2_root_vs_R4_root

up

58

R4p2_root_vs_UN_Root

down

803

R4p2_root_vs_UN_Root

up

766

rhcN_Nod_vs_R2_Nod

down

937

rhcN_Nod_vs_R2_Nod

up

531

rhcN_root_vs_R2_root

down

4

rhcN_root_vs_R2_root

up

11

rhcN_root_vs_UN_Root

down

211

rhcN_root_vs_UN_Root

up

366

  1. Nod, nodule; UN, uninoculated; R2 and R4 are two wildtype strains of S. fredii with different host compatibilities. R2p4, R2 with NopP from R4 swapped in; R2i4, R2 with NopI from R4 swapped in; R4p2, R4 with NopP from R2 swapped in; R4i2, R4 with NopI from R2 swapped in; rhcN, R2 T3SS mutant.
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