Table 1 Summary of genome assemblies and gene annotations in the alligator gar genome.
From: Chromosome-scale genome assembly and gene annotation of the Alligator Gar (Atractosteus spatula)
Item | Category | Number |
|---|---|---|
Sequencing data | ONT (Gb) | 65.43 |
WGS (Gb) | 206.46 | |
RNA (Gb) | 8.82 | |
Hi-C (Gb) | 107.81 | |
Contig | Estimated genome size (Gb) | 1.19 |
Contigs | 300 | |
Contig length (Gb) | 1.05 | |
Maximum length (Mb) | 42.5 | |
Contig N50 (Mb) | 15.7 | |
BUSCO (vertebrata) complete (%) | 96.7 | |
Chromosome | Karyotype | 2n = 56 |
Number > = 100 bp | 39 | |
Number > = 5000 bp | 39 | |
Maximum length (Mb) | 76.3 | |
Scaffold N50 (Mb) | 56.8 | |
Anchored pseudochromosomes (%) | 98.26 | |
GC content (%) | 40.3 | |
BUSCO (vertebrata) complete (%) | 96.7 | |
Annotation | Repeat sequences (%) | 30.91 |
Number of protein-coding genes | 19,103 | |
Number of functional annotated genes | 19,070 | |
Average gene length (bp) | 22,120.55 | |
Average exon length (bp) | 166.70 | |
Average intron length (bp) | 2231.85 | |
Average exon per gene | 10.15 |
